PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108734.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 540aa    MW: 58322.7 Da    PI: 6.7985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108734.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33246302259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ei+Y+g+Hnh+
  XP_010108734.1 246 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-EGQVTEIIYKGQHNHQ 302
                     8****************************************.***************8 PP
2WRKY104.55.8e-33425483159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v++tYeg+Hnh+
  XP_010108734.1 425 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASSDSKAVITTYEGKHNHD 483
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-29233304IPR003657WRKY domain
PROSITE profilePS5081123.342240304IPR003657WRKY domain
SuperFamilySSF1182907.32E-26244304IPR003657WRKY domain
SMARTSM007741.7E-36245303IPR003657WRKY domain
PfamPF031065.1E-26246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36410485IPR003657WRKY domain
SuperFamilySSF1182902.62E-29417485IPR003657WRKY domain
PROSITE profilePS5081138.607420485IPR003657WRKY domain
SMARTSM007741.1E-38425484IPR003657WRKY domain
PfamPF031061.5E-25426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAVNEERPSE STSSQPSISS APPPRPTITP PQRTSFEALF NGGGAGSGFV GFSPGPMTLV  60
SSFFSDGDDC KSFSQLLAGA MASPAAAPAG PSLLLTEERT AGGSSVSVDG GADDGADDDF  120
RFKQNRPSEL VASQSPVFTG GLPDSLGLFS PGQGPFGMTH QQALVQVSAQ AAQANSNMPM  180
ETEYLASLSA PPAATLTQPQ AFSSNTTTQQ EVPSLMPDSS IATKESSDFS HQDLKSQSSS  240
FDKPNDDGYN WRKYGQKQVK GSEFPRSYYK CTHPNCPVKK KVERSLEGQV TEIIYKGQHN  300
HQRPKPNKRG KDVGNSNGNS TTQGNRDLVS QVQSGYFDKS TEGMSTYSIS RMDQESSQAT  360
NEHLSGTSDS GEAGEAVVGV EEKDEDEPEP KRRSTEVRHL EAASSHKTVT EPRIIVQTTS  420
EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK CTTTGCNVRK HVERASSDSK AVITTYEGKH  480
NHDVPASKTS SHNTANNSSS NQRLQGTRTE NHHGSRNPMG QTNNGRKPIG HLRLKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-41246486878Probable WRKY transcription factor 4
2lex_A7e-41246486878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108734.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108734.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-163WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLW9S8H10.0W9S8H1_9ROSA; Putative WRKY transcription factor 4
STRINGXP_010108734.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-115WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]