PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108742.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 230aa    MW: 25940.6 Da    PI: 8.7514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108742.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-133476754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  XP_010108742.1 34 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 76
                    57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6982776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-172791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.80E-133181No hitNo description
SMARTSM003534.0E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-163393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-113476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MWSSWGLDEA FSGYYDSSSP DGAASSSAAS KNIVSERNRR KKLNERLFAL RAVVPNISKM  60
DKASIIKDAI DYIQELHEQE RRIQAEIMDL ESNKTKKINP GYYHQDHFIE QELPILLRSK  120
KKKTDQHLYD SGGSRNCSTS PIEVLELRVT YMGEKTLVVS LTCSKRTDTM VKLCEVFESL  180
KLKIITANIT AFSGRLLKTV LIEAPPIGLT RDDLTTGGRS YISWQLGTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-143276953Transcription factor MYC2
5gnj_B7e-143276953Transcription factor MYC2
5gnj_E7e-143276953Transcription factor MYC2
5gnj_F7e-143276953Transcription factor MYC2
5gnj_G7e-143276953Transcription factor MYC2
5gnj_I7e-143276953Transcription factor MYC2
5gnj_M7e-143276953Transcription factor MYC2
5gnj_N7e-143276953Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029453.11e-149transcription factor bHLH35
SwissprotQ2HIV96e-76BH035_ARATH; Transcription factor bHLH35
TrEMBLW9S0G41e-170W9S0G4_9ROSA; Uncharacterized protein
STRINGXP_010108742.11e-170(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-68bHLH family protein