PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108748.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 377aa MW: 40464.8 Da PI: 8.9436

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108748.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	79	139	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ XP_010108748.1 79 PETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 139 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	63	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-33	82	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MVFSSVPVFL DPPNWQQQQP NHDHHQQQQQ QGGRTDHHQN PQLPPPPQPP QAAGGGCGTG 60 SMRPGSMADR ARMAKLPQPE TALKCPRCDS TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG 120 GALRNVPVGG GCRRNKRSKG SSRSKSPGSV AAASSERQSG ACASTSAAAM SSNGGNILGH 180 LAPHQPPPHL PFLPALHHLG TDHYGGSGDL GLNFSGIPLP QVVASGSVGS GGADVEFLPA 240 GLAEQWRLQQ QVQQQVQQFP FLANLEAPPN TSTTGLFPFD HHHHHHHHHE NVEPPPGYVR 300 SKPLDSGVSG VVSQMASVKV EGNLSNTQGL NNISRNFLGG LGNHHDHQNQ YNLGGTAGNA 360 WTDLSTFSTT SSTNHLL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MVFSSVPVFL DPPNWQQQQP NHDHHQQQQQ QGGRTDHHQN PQLPPPPQPP QAAGGGCGTG  60
SMRPGSMADR ARMAKLPQPE TALKCPRCDS TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG  120
GALRNVPVGG GCRRNKRSKG SSRSKSPGSV AAASSERQSG ACASTSAAAM SSNGGNILGH  180
LAPHQPPPHL PFLPALHHLG TDHYGGSGDL GLNFSGIPLP QVVASGSVGS GGADVEFLPA  240
GLAEQWRLQQ QVQQQVQQFP FLANLEAPPN TSTTGLFPFD HHHHHHHHHE NVEPPPGYVR  300
SKPLDSGVSG VVSQMASVKV EGNLSNTQGL NNISRNFLGG LGNHHDHQNQ YNLGGTAGNA  360
WTDLSTFSTT SSTNHLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108748.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108748.1	0.0	dof zinc finger protein DOF3.6
TrEMBL	W9S0K8	0.0	W9S0K8_9ROSA; Dof zinc finger protein
STRING	XP_010108748.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-37	Dof family protein

Link Out ? help Back to Top
Entrez Gene	21394667