PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108787.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 225aa    MW: 25926.9 Da    PI: 8.6676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108787.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
   XP_010108787.1 19 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding55.11.8e-1772115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
   XP_010108787.1  72 RGNITPEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 115
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-231269IPR009057Homeodomain-like
PROSITE profilePS5129416.0661466IPR017930Myb domain
SuperFamilySSF466892.02E-3017113IPR009057Homeodomain-like
SMARTSM007177.2E-131868IPR001005SANT/Myb domain
PfamPF002493.0E-161966IPR001005SANT/Myb domain
CDDcd001674.12E-102166No hitNo description
PROSITE profilePS5129425.75767121IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2570121IPR009057Homeodomain-like
SMARTSM007172.6E-1571119IPR001005SANT/Myb domain
PfamPF002493.5E-1672115IPR001005SANT/Myb domain
CDDcd001673.77E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDNKKASNIN SSQDVEVRKG PWTMEEDLIL INYIANHGEG VWNSLAKAAG LKRTGKSCRL  60
RWLNYLRPDV RRGNITPEEQ LIIMELHAKW GNRWSKIAKH LPGRTDNEIK NYWRTRIQKH  120
IRQADQHQSN NMIHRQNSEM MIINNQASTS QASACNTVDA MEISNTYSPP FISHQGSYNI  180
DHQTNYPLAL PPTTTSTTSS SNIDHQNYNW SAMEDLWSMQ LFNSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261612124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108787.11e-169myb-related protein 305
SwissprotP813914e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLW9SB971e-167W9SB97_9ROSA; Myb-related protein 305
STRINGXP_010108787.11e-168(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.14e-86myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]