PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108794.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 499aa    MW: 56129.7 Da    PI: 9.2148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108794.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16223269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed  l+++v ++G + W++Ia+t+  gR +kqc++rw+++l
   XP_010108794.1 223 KGQWTPQEDRVLIQLVGRYGIRKWSKIAKTLS-GRVGKQCRERWHNHL 269
                      799*****************************.*************97 PP
2Myb_DNA-binding54.33.2e-17275317145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd++l++a+k+ G++ W+ Iar+++ gR+++ +k++w+
   XP_010108794.1 275 KDTWSEEEDKILIRAHKEVGNK-WAEIARRLP-GRSENTIKNHWN 317
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.272218273IPR017930Myb domain
SuperFamilySSF466894.03E-30220316IPR009057Homeodomain-like
SMARTSM007171.1E-12222271IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25224274IPR009057Homeodomain-like
CDDcd001677.63E-13226269No hitNo description
PfamPF139216.5E-18226283No hitNo description
SMARTSM007172.9E-16274322IPR001005SANT/Myb domain
PROSITE profilePS5129419.964274324IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-20275322IPR009057Homeodomain-like
CDDcd001672.36E-13277320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MKDTDFPFFH NLFHGSSWKP EVIGGVNNGL IFPLGPSPSP KGNNLFQNPF LNFDQNLPLS  60
VSNFGHFTTQ GSSPGPLLGL SNTSNIESFH EPYTNDVGVV SSKDLNIPNV FNSLPLAPPS  120
HNGILHGLPS TKPFWGNNQS SIHQAAGQPP IPTYSSSLNF RDLGSTKANT NLPDHDDDIH  180
VSCITTPDQK GQQKRVAGQK KRKRMHIMRK ASKGAQKKSN VVKGQWTPQE DRVLIQLVGR  240
YGIRKWSKIA KTLSGRVGKQ CRERWHNHLR PDIRKDTWSE EEDKILIRAH KEVGNKWAEI  300
ARRLPGRSEN TIKNHWNATK RRQNSKKRNK DLNFKGSLLQ NYIRSITTPN QNDNNIAINL  360
NNDAAKNDDD DGVDNNTTSV DDHEPQMQQL LAENSDVTCV DNWVVNLATN LVYSTNNGAN  420
NINNNVNNIK FVDVENNKSL YSESYGFRSF LDEMAYGTAM ENESNVDFQM RTEIESLMKG  480
PGEVKKEMDL MEMICQGKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-432213232104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108794.10.0transcription factor MYB115
TrEMBLW9S0Q40.0W9S0Q4_9ROSA; Transcription factor
STRINGXP_010108794.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-64myb domain protein 118