PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010109026.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 275aa MW: 30616.8 Da PI: 7.1268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010109026.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	188	231	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq XP_010109026.1 188 IAAKNRRERISERLKILQELIPNG-----SKVDLVTMLEKAIGYVKFLQ 231 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-13	180	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-12	180	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.843	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.26E-10	183	235	No hit	No description
SMART	SM00353	7.5E-11	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	189	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MALAKERSIP HEIPSYNSAE DQRSTNINGV PLASINRLLD AHESVINFSS LILSSSSSSD 60 QSFLSFEQKD HTQEYKYHSY DDHNRSRFSA GFNCFQTASD YASSKQGNHD PQYSGDHHAG 120 SYAWLYSEST VTTDSFDESG TQDQSAGLIN KRPHMGERTA EAVKKQCSSN NKKPKVHKSS 180 PSKDPQSIAA KNRRERISER LKILQELIPN GSKVDLVTML EKAIGYVKFL QLQVKVLATD 240 EFWPVQGGKA PDISQVREAI DAMLSSQRDT SSSSH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010109026.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010109026.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	3e-61	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	W9S998	0.0	W9S998_9ROSA; Putative transcription factor bHLH086
STRING	XP_010109026.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-59	RHD SIX-LIKE 1

Link Out ? help Back to Top
Entrez Gene	21409848

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]