PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010109229.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 374aa MW: 42204.2 Da PI: 8.1461

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010109229.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	31	92	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss XP_010109229.1 31 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 92 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	24	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MEASTSKQAN NNNNNNSNNM LDQRSRARPQ KDQALNCPRC NSTNTKFCYY NNYSLTQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSTTITSSS SNSLLPISSA PKKLNVDHHH 120 IIPPPSLNFP PDQNPKIHHA QDLNLAYPPT SSHHDHHHHH HHNSISTSFV ELPYNSTTRI 180 DHNKISHTQN PSTTMELLKT AASRDHGSGL IGSFMSMPVN NPDHHNSNTM FSTGFPNLAQ 240 EFKPSLSFGL DHHHHHHHHG YNMDDHQDGN LHGVQESSTT GVRLLFPSTD DQDLKQVSST 300 TTTTNTHDHD HDHHQHQHHQ FELNIKGQGD ISNGYNWNGM LGHGGFIRII VKKIMHPWPS 360 DHHAFHDLPQ LAIV

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MEASTSKQAN NNNNNNSNNM LDQRSRARPQ KDQALNCPRC NSTNTKFCYY NNYSLTQPRY  60
FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSTTITSSS SNSLLPISSA PKKLNVDHHH  120
IIPPPSLNFP PDQNPKIHHA QDLNLAYPPT SSHHDHHHHH HHNSISTSFV ELPYNSTTRI  180
DHNKISHTQN PSTTMELLKT AASRDHGSGL IGSFMSMPVN NPDHHNSNTM FSTGFPNLAQ  240
EFKPSLSFGL DHHHHHHHHG YNMDDHQDGN LHGVQESSTT GVRLLFPSTD DQDLKQVSST  300
TTTTNTHDHD HDHHQHQHHQ FELNIKGQGD ISNGYNWNGM LGHGGFIRII VKKIMHPWPS  360
DHHAFHDLPQ LAIV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010109229.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	3e-59	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029778.1	0.0	dof zinc finger protein DOF4.6
TrEMBL	W9SCE1	0.0	W9SCE1_9ROSA; Dof zinc finger protein
STRING	XP_010109229.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-38	Dof family protein

Link Out ? help Back to Top
Entrez Gene	21395090