PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010109356.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

M-type_MADS

Protein Properties

Length: 75aa MW: 8499.91 Da PI: 10.4583

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010109356.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103	1.1e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++ XP_010109356.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 59 79***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	34.132	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.93E-41	2	61	No hit	No description
SuperFamily	SSF55455	1.44E-31	2	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN 60 SPLLKGITDL PVGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	3e-22	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269\|PubMed:11828031, ECO:0000269\|PubMed:16326928, ECO:0000269\|PubMed:9869408}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010109356.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687169.1	2e-37	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_010687172.1	2e-37	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Refseq	XP_010687174.1	2e-37	PREDICTED: floral homeotic protein AGAMOUS isoform X5
Refseq	XP_021723446.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021723454.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021764203.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021764204.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021764205.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021764206.1	2e-37	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_021764208.1	2e-37	floral homeotic protein AGAMOUS-like isoform X3
Swissprot	Q40704	6e-38	MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBL	W9S275	3e-47	W9S275_9ROSA; MADS-box transcription factor 3
STRING	XP_010109356.1	5e-48	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	6e-39	MIKC_MADS family protein

Link Out ? help Back to Top
Entrez Gene	21385594

Publications ? help Back to Top
Kyozuka J,Shimamoto K Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol., 2002. 43(1): p. 130-5 [PMID:11828031] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]