PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109563.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 472aa    MW: 52820.7 Da    PI: 5.0858
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109563.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS157.31.3e-48522402188
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA a++ +d +laq++++ l++ as+ gd +qRla+ f++AL +r +r +++ +++l+ + +      + +++++l  ++++ P+++f+
  XP_010109563.1  52 EKLLLHCASALERNDVTLAQQIMWVLNNVASSVGDLNQRLASWFLRALISRASRVCPTAMNSLRRNGDV---GRRLMSVTELagYVDLIPWHRFG 143
                     689***************************************************888777766555554...555555555578*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     + + N+ I +av+g e+vH++Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + + e++g rLa+f +  +vpfefnv+  ++ 
  XP_010109563.1 144 YCASNSVIFKAVQGYEKVHVLDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSFRPQVpplLNVSCEQVGLRLANFSKFKNVPFEFNVIGNSSS 238
                     ***************************************************99886666889999************************844433 PP

            GRAS 187 ed 188
                     ++
  XP_010109563.1 239 SS 240
                     33 PP
2GRAS139.73e-43246462165373
            GRAS 165 LakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.............desvsleserdevLklvkslsPkvvvvveqe 245
                     L    ee+++ +f+f+vl    l++l++++L+++ +Eal+Vn++  l +l+             ++  + +s rd++L+++++l+P++vvvv+++
  XP_010109563.1 246 LITTSEECNLyKFQFEVL----LSQLNPSSLNLQDDEALVVNFQNWLRYLPddhqqigssttprKDANDFNSLRDTFLNVIRDLNPRIVVVVDED 336
                     566666777647*****8....99***********************************9999988889999*********************** PP

            GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                     +d+n++s+  r++ +++y +  fd+le+ lp++s +ri +E   +g +i+nv+  eg++r+er e+  + ++r+++aGF ++p+ e+++k++k l
  XP_010109563.1 337 SDLNASSLTSRIATCFNYLWIPFDALETFLPKDSCQRIEYESD-IGHKIENVIGFEGFQRIERLESGVTSSQRMRNAGFFSIPFWEDTVKEVKDL 430
                     *******************************************.*************************************************** PP

            GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     l +++  g+ ++ e++ lvl+Wk+++ v+++aW
  XP_010109563.1 431 LDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 462
                     *****.889999999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.44525444IPR005202Transcription factor GRAS
PfamPF035144.7E-4652240IPR005202Transcription factor GRAS
PfamPF035141.0E-40246462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MKTESRGSTT SLSLQSPNNL FNSSTAHEGS LELAGTLNGC TQLGSLDGGC IEKLLLHCAS  60
ALERNDVTLA QQIMWVLNNV ASSVGDLNQR LASWFLRALI SRASRVCPTA MNSLRRNGDV  120
GRRLMSVTEL AGYVDLIPWH RFGYCASNSV IFKAVQGYEK VHVLDFSITH CMQWPTLIDA  180
LAKRPEGPPS LRITVPSFRP QVPPLLNVSC EQVGLRLANF SKFKNVPFEF NVIGNSSSSS  240
SSETTLITTS EECNLYKFQF EVLLSQLNPS SLNLQDDEAL VVNFQNWLRY LPDDHQQIGS  300
STTPRKDAND FNSLRDTFLN VIRDLNPRIV VVVDEDSDLN ASSLTSRIAT CFNYLWIPFD  360
ALETFLPKDS CQRIEYESDI GHKIENVIGF EGFQRIERLE SGVTSSQRMR NAGFFSIPFW  420
EDTVKEVKDL LDEHASGWGM KREEDMLVLT WKGHNSVFAT AWVASNIIGL ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-485246288472Protein SHORT-ROOT
5b3h_B4e-495246234418Protein SHORT-ROOT
5b3h_E4e-495246234418Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109563.10.0scarecrow-like protein 32
TrEMBLW9S2Q40.0W9S2Q4_9ROSA; Uncharacterized protein
STRINGXP_010109563.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein