PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109645.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 319aa    MW: 36262.4 Da    PI: 9.0715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109645.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++ ++   +W ++a++++ g+t  ++   ++ 
   XP_010109645.1 28 KWTAEENKQFENALALYDKDtpdRWVKVAAMIP-GKTVGDVMKQYRE 73
                     8********************************.****999998875 PP
2Myb_DNA-binding461.2e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_010109645.1 144 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-42274IPR009057Homeodomain-like
PROSITE profilePS5129310.2792479IPR017884SANT domain
SMARTSM007177.7E-102577IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-112881IPR009057Homeodomain-like
CDDcd001672.88E-82874No hitNo description
PfamPF002491.9E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129420.244137193IPR017930Myb domain
SuperFamilySSF466892.08E-17139192IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-18140192IPR006447Myb domain, plants
SMARTSM007173.5E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12141188IPR009057Homeodomain-like
PfamPF002494.3E-12144188IPR001005SANT/Myb domain
CDDcd001674.19E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MYRGIGILSP ATYLEKSNWL FQESREAKWT AEENKQFENA LALYDKDTPD RWVKVAAMIP  60
GKTVGDVMKQ YRELEEDVSD IEAGLIPIPG YSSNSFTLEW VNDNNYNNNY YNQGFDGFKQ  120
FYCAGGKRGT STRPSDQERK KGVPWTEEEH RQFLLGLKKY GKGDWRNISR NFVTTRTPTQ  180
VASHAQKYFI RQLAGGKDKR RSSIHDITTV NIPDSKSPSP DDKTQSSPDH SATIMQPTQQ  240
HPKITAMVKQ QYDWQPSNEG LPLVFNPTNG NALLGRPFCG FASYGSKLQE QNFLSGSLRG  300
SQFGPYSSAL YQMQSMHHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1629931175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109645.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-115DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLW9SDH40.0W9SDH4_9ROSA; Transcription factor
STRINGXP_010109645.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-123MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]