PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109673.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 559aa    MW: 61084.9 Da    PI: 6.5438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109673.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-16330376455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_010109673.1 330 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 376
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-17329380No hitNo description
SuperFamilySSF474591.23E-20329404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-21330384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MNHCVPDFEM EDDYSISTSS GVGRPKKSFM PEDDIMELLW QNGQVIVQSQ NQRSVMKSSP  60
PSKYDAVIPA DMEIRPSQAQ QVHEHHHHHQ QQQQHLFMQE DEMASWLHYP LVDDPSLDHN  120
FSADLLYPAP SVTTATATTA AAAGTAINSA PQIRHAHIPE IRTPATVAAA PVPRPPIPPA  180
RTEPNVKNFG HFSRHNKAMV EAAGPSCSKS AAVTVVDSCE TPAVGPSSRV CEIGRSPGET  240
SYANLASGGG FSGKEAMRCE GTMTSSPGDS SASAEPPPPP AKLPAEDRKR KGIEADDAEC  300
QSEDVEFESG DTKKQVRGTT STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKSD  360
KASMLDEAIE YLKSLQLQVQ MMSMGCGMVP MMFPGIQQYM PPMGMGIGMG MGMGMEMGMN  420
RPIMPFPNVL TGSALPTPAA AAHLGPRFPM PAFHMPPVPT TEQSRAQATS QSDHMFQSFA  480
AQNPNPSRIP NFSDPYQQYL GSHQMQLPVL QQNQAMVHPS TSKPSTSREP ENPENHQSGG  540
LLYLVSLHNN YVVLKEGQH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109673.20.0transcription factor PIF1
TrEMBLW9SDJ90.0W9SDJ9_9ROSA; Uncharacterized protein
STRINGXP_010109673.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-72phytochrome interacting factor 3-like 5