PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109853.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27577.1 Da    PI: 7.0452
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109853.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rienk+ rqvtf+kRr+g+lKK +ELSvLCda++ +iifss+gk+yey+s
  XP_010109853.1  9 SRIENKTTRQVTFAKRRAGLLKKTHELSVLCDAQIGLIIFSSNGKMYEYCS 59
                    59***********************************************96 PP
2K-box53.11.4e-1874162390
           K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                      ++g++  e++++e+l+ el+++k  ++nLq ++ ++ GedL+s s++eL  Le+ Le+s+ k+R++K ell +q+++lq+  ke++ +
  XP_010109853.1  74 LATGTRiEEHNESEQLHGELRRIKTDTHNLQLSLQRYTGEDLSSVSMEELDGLEHMLEHSVHKVRTRKIELLQQQMQNLQRTIKEHEAA 162
                     556667677889999*****************************************************************988887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
CDDcd002659.89E-41277No hitNo description
SuperFamilySSF554553.01E-30282IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1681160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.83586188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKITISR IENKTTRQVT FAKRRAGLLK KTHELSVLCD AQIGLIIFSS NGKMYEYCSA  60
EASSMENIIK RYQLATGTRI EEHNESEQLH GELRRIKTDT HNLQLSLQRY TGEDLSSVSM  120
EELDGLEHML EHSVHKVRTR KIELLQQQMQ NLQRTIKEHE AAAALAAEHH HHQAQMTMVA  180
KAEEENRNAN HVNVLNQFPF DGEEQPSSVL QLATLQAAPG SHNFYPCRLL PTQPNLQDYS  240
LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19172169MEF2C
5f28_B4e-19172169MEF2C
5f28_C4e-19172169MEF2C
5f28_D4e-19172169MEF2C
6byy_A4e-19172169MEF2 CHIMERA
6byy_B4e-19172169MEF2 CHIMERA
6byy_C4e-19172169MEF2 CHIMERA
6byy_D4e-19172169MEF2 CHIMERA
6bz1_A5e-19172169MEF2 CHIMERA
6bz1_B5e-19172169MEF2 CHIMERA
6bz1_C5e-19172169MEF2 CHIMERA
6bz1_D5e-19172169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030137.11e-151MADS-box protein defh21
SwissprotQ9ATE53e-69FBP24_PETHY; MADS-box protein FBP24
TrEMBLW9SE521e-179W9SE52_9ROSA; MADS-box protein FBP24
STRINGXP_010109853.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]