PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110133.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRF

Protein Properties

Length: 307aa MW: 33672.6 Da PI: 10.4599

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110133.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	7e-25	206	250	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_010110133.1 206 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 250 79****************************************986 PP
2	QLQ	49.5	1.3e-17	137	171	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT++Q+++L++Q+l+yKy+ an+P P++L ++i+k XP_010110133.1 137 FTPSQWMELEQQALIYKYITANVPNPSNLPLPIRK 171 *****************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-9	135	171	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.429	136	171	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-11	137	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	206	250	IPR014977	WRC domain
Pfam	PF08879	2.9E-21	207	249	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDRKRISSGP CAREVVASGA RKRFSLAVCT GERSEGTAFD DHWRSSKLSK SNSDADFSAS 60 KALRNSNLLM RSNSTLAFFD NIGHPQHQML SFSSPKPEPL PYSPNTLSAY NSRNMAGFNS 120 GSLVNGGNVM HGEKCVFTPS QWMELEQQAL IYKYITANVP NPSNLPLPIR KTFDSVGFSS 180 FPSGLLRPNN TLGWGAFHLG FSNNNDPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG 240 RHRSRKPVEG QTGHSLAGAN AVAINSTSSV ALPVGGTASN SLAATSTNMN HQHQLQSLNR 300 WPKSELT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110133.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030368.1	1e-172	growth-regulating factor 1
Swissprot	O81001	7e-59	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	W9ST70	0.0	W9ST70_9ROSA; Uncharacterized protein
STRING	XP_010110133.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-61	growth-regulating factor 1

Link Out ? help Back to Top
Entrez Gene	21387286

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]