PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110171.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 603aa    MW: 69764.7 Da    PI: 6.669
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110171.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-29129214187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_010110171.1 129 RWPRQETLTLLEIRSRLNSKFKDTNQKAPLWDEVSRIMaEEHGYHRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 214
                     8*************************************999*****************************98..55667*******85 PP
2trihelix49.11.5e-15431519183
        trihelix   1 rWtkqevlaLiearr..emeerlrrg...klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                     rW+++e+  Lie+r+  +mee+++ g     k + Wee+++km++ g+ r++ +Ckekwe+ + + + + e +kkr+ +  +s+ +yfd
  XP_010110171.1 431 RWSEEEISSLIELRSkyNMEETFQGGlseYVKDGIWEEIASKMASLGYDRTSLECKEKWESASVYVRMTSECRKKRKeDYYKSSAAYFD 519
                     8**************777999999752225899**************************************999995144455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.143122187IPR017877Myb-like domain
SMARTSM007170.16126189IPR001005SANT/Myb domain
PfamPF138371.1E-20128215No hitNo description
CDDcd122036.63E-20128194No hitNo description
SMARTSM007172.2E-5428495IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5430491IPR009057Homeodomain-like
PfamPF138379.6E-12430508No hitNo description
CDDcd122032.10E-16431499No hitNo description
PROSITE profilePS500908.072431493IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDDPYGLPAE FRHFTATTTR PDHHQHDHPV TNFPAEPSFS VHRNLTPPFP LVSGGGLVEF  60
GSDNHDHHHG HHIAHHDHHQ LISGATSCAL MYGHHDQTVE RCGGIWNNNN SSIGGNIIMD  120
GNNEGNNSRW PRQETLTLLE IRSRLNSKFK DTNQKAPLWD EVSRIMAEEH GYHRSGKKCK  180
EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEAIYGDQT SNIKSSSLLL NTNDLSRNPL  240
LYDHPMTSTT STPNLNMRTT NINHESLSFS ITSTEFETSS SENNNEDDLS TIANFKMKMK  300
GGIINNERPS RNCSLSWKSK VEDFVDEQMK KIMVTQETWM EKMLKSIIDK EEERLVKEEE  360
WRKQEAAKFN QEVSEFWAKE KAWVEARDVA LMGTLKKFRA GKGIELPSFP ERVIGKDHIR  420
SDMSSCASYH RWSEEEISSL IELRSKYNME ETFQGGLSEY VKDGIWEEIA SKMASLGYDR  480
TSLECKEKWE SASVYVRMTS ECRKKRKEDY YKSSAAYFDD DHDDQLNLKQ EHNIHDERHN  540
IHDHMGLQLM DEGLSPSTSN VGTQLQYPNS CFHLLFGEGE NLWEKYGGLK LTKDKMNRQV  600
YNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502507RKKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110171.20.0trihelix transcription factor PTL
TrEMBLW9S4E40.0W9S4E4_9ROSA; Trihelix transcription factor GT-2
STRINGXP_010110171.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-86Trihelix family protein