PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110221.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 211aa    MW: 23390.1 Da    PI: 8.3891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110221.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-192978255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++aa+ +l+g
  XP_010110221.1 29 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDAAAWSLRG 78
                    69*******.**********883....5**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.672986IPR001471AP2/ERF domain
CDDcd000183.91E-182987No hitNo description
SMARTSM003803.7E-362992IPR001471AP2/ERF domain
PfamPF008471.1E-122978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-312987IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-223087IPR016177DNA-binding domain
PRINTSPR003671.4E-103041IPR001471AP2/ERF domain
PRINTSPR003671.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRGGKSSDP TRTRIDQKQR PPSHLQEVRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEEAARAYD AAAWSLRGPK AKTNFPNPNP NFHDERVSSK IDVIQASRPT SSSLSSTVES  120
FSGPRVSAQA PAPAPRPHRR PVRVVPPDDC HSDCDSSSSM VDDGDDCVLT SSSCRVLPFD  180
LNLPPSRMMD DSDWCGGGVD DDELRATALC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2129871473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296403e-42KP229640.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF17) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110221.11e-152ethylene-responsive transcription factor 3
SwissprotQ9SXS85e-38ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLW9S4K31e-150W9S4K3_9ROSA; Ethylene-responsive transcription factor 3
STRINGXP_010110221.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-25ethylene responsive element binding factor 3