PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110954.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 334aa MW: 36243.4 Da PI: 8.4062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110954.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	20	41	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+++F ++ L H+r H XP_010110954.1 20 ACSYCKRVFDDPWALGGHQRAH 41 599*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	19	41	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.683	19	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MNFHLTSGEK NVERCPHICA CSYCKRVFDD PWALGGHQRA HREDTRSRKS WYVPGRSGNP 60 LNMTGPTPNS HMTTQFKHFP GGSGNNQGAV FGKAPPSLIF PKRLPTNNNG WANVRQLSVN 120 SVGNTKTSFC AAPNFPSGGG RAEIHQLNTF SGTASAPTYC TNPSAIPANP SLLMGPGNVC 180 QFNTNQSRSF MGGGQFSGNA LPQFQYLNQG IYAVAVPGPL LSSNQQPSFR GPTNIGSSFP 240 YENHLSGRGG FGEYNENHFL THQGGKKRCF GEATHVMSVP KMPKIDSNLA METVEHGKKE 300 LLLFKDAEKS SSDLEISVDA NEEPETDLDL SLHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9SH63	0.0	W9SH63_9ROSA; Uncharacterized protein
STRING	XP_010110954.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17103	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	3e-06	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21404498