PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111011.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 189aa    MW: 20587.7 Da    PI: 10.3855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111011.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.7e-221055247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     ++++s rqvtfskRr+g++KKA+EL +LC+aevav++fs+ gk +
  XP_010111011.1 10 VVKDTSCRQVTFSKRRTGLFKKANELATLCGAEVAVVVFSPGGKPF 55
                    578999***********************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-28173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.422161IPR002100Transcription factor, MADS-box
CDDcd002653.10E-31274No hitNo description
PRINTSPR004041.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251257IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRRKIEMKV VKDTSCRQVT FSKRRTGLFK KANELATLCG AEVAVVVFSP GGKPFSFGQP  60
NVESVADRFL KQESKPNRDK AAIAAAVPSK NKKNNAAAAA AAAATAEKLN QQLNEQVKQL  120
QDEKKRGEAL DKEIAAGEKA APIDIGDLGF EDLKKLKRSL EELREKGKER VGEIEASSTL  180
LMLSKDFRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15195193MEF2C
5f28_B2e-15195193MEF2C
5f28_C2e-15195193MEF2C
5f28_D2e-15195193MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111011.11e-132agamous-like MADS-box protein AGL29
TrEMBLW9S6V31e-131W9S6V3_9ROSA; Agamous-like MADS-box protein AGL61
STRINGXP_010111011.11e-132(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-36AGAMOUS-like 29