PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111013.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25684 Da    PI: 7.5737
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111013.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.8e-161867150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kri+ +  r +tfskRr gi KKA E+ +LC+aev    fs++gk + ++
  XP_010111013.1 18 KRIDKEDDRITTFSKRRSGIYKKATEIATLCGAEVGFGTFSPSGKPFSFA 67
                    79999**************************************9977775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-211069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.8061070IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-221183IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-161232IPR002100Transcription factor, MADS-box
PfamPF003192.1E-181966IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAMEDRRQTR GKQKIEIKRI DKEDDRITTF SKRRSGIYKK ATEIATLCGA EVGFGTFSPS  60
GKPFSFAQPS MDSIESRLNN IIQDQPPPLM FNLNAGDSDD HPFVRAHRQA KLEALIQRYN  120
ELAGSLEAEK EKRKAIEKLV EDKAAAVRDK APMGTGWWET LVDDLGYEEL LRMNESLEYL  180
HKKLCNHING EKATPAFDAM ASAQGISNLF ITEDPNALRN RNSGKNPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111013.21e-169agamous-like MADS-box protein AGL29
TrEMBLW9SET51e-169W9SET5_9ROSA; Agamous-like MADS-box protein AGL62
STRINGXP_010111013.11e-170(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-31AGAMOUS-like 64