PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010111248.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 249aa MW: 28524.8 Da PI: 10.545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010111248.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.2	9.5e-11	134	206	7	78
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegD 78 p +++s+ +lp kfa++h +k e+ + +l+ ++gr W+v +++r + ++ + +GW+ Fv++n L+++D XP_010111248.1 134 PRGSFSSKGCTLPYKFAKTHINKIEG--DAILKFSDGRYWSVLYKVRDRLNGspvAKFCRGWSAFVRDNALEQRD 206 6667888899********544334..79999999****9944444445567779**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.61E-6	51	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.79E-7	52	125	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.4E-7	52	126	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	6.893	64	127	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.995	128	226	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-9	134	206	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.12E-10	137	206	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.7E-11	137	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-8	144	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTGQFRTARH CSKRWRNICQ KKCGDVTKKA LSAKEKAQAL ERASDFKSKY PFLKKYVENK 60 HADVILKALD GRTWFVNYTF GVKEKTPNAK FLNGWKSFAV DKSIDILFEV YIFRENGDST 120 TLQVHKTATS KVRPRGSFSS KGCTLPYKFA KTHINKIEGD AILKFSDGRY WSVLYKVRDR 180 LNGSPVAKFC RGWSAFVRDN ALEQRDESSV SEDQKRILEV TSIRGLHPLM LAELLKQPAN 240 SSQQVPIFK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010111248.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9S7J0	0.0	W9S7J0_9ROSA; Uncharacterized protein
STRING	XP_010111248.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14300	4	16

Link Out ? help Back to Top
Entrez Gene	21410506