PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010111436.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 450aa MW: 49818.9 Da PI: 6.4553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010111436.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2.1e-08	249	286	4	42
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKae 42 +h+ +Er RR++iN ++ L+el+P + +++k l+K++ XP_010111436.1 249 SHSLAERARREKINARMKLLQELVPGC--NKDKMpLNKID 286 8*************************7..24444699975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.34E-5	243	286	No hit	No description
SuperFamily	SSF47459	2.5E-11	243	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.551	245	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-11	249	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	249	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	251	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-11	320	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.5E-11	321	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MESSGVTLAG STPVGAQPGE PGLDSLQFGE EIQRLMAVPP ENASSFTALL ELPAPQAMEL 60 LHHAPDPDRV PAMANLSGEP LHKPYPHQTF GSSLTFLSDP ALIERAAKYS VFAGEHSPET 120 SSVPSNSSAN LEKVKSEPAE TDSNPNSSQP LVSDPSVEEK NQRPSAKRKE REKKVRKLKQ 180 RGIDRLGFLG FPFLAKFDKS RFQKSEIDHH FCKIQAKASS KKSKNESSQD AQKLPYVHVR 240 ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKDKM PLNKIDEDPS FFPSGTTNDG 300 SSVLKSQECN SVLLCDLDPS RSISGTALVL DEIINHVQSL QRQVEFLSMR LAAVNPRIDF 360 NLDSILAIDN GSVMDGNLPN MVSSVMWPEF PINGNRQQFQ QQWHFDSLHQ PLWGREEDNQ 420 TFVTPENSLL TYDSSANSAS LHSSQLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MESSGVTLAG STPVGAQPGE PGLDSLQFGE EIQRLMAVPP ENASSFTALL ELPAPQAMEL  60
LHHAPDPDRV PAMANLSGEP LHKPYPHQTF GSSLTFLSDP ALIERAAKYS VFAGEHSPET  120
SSVPSNSSAN LEKVKSEPAE TDSNPNSSQP LVSDPSVEEK NQRPSAKRKE REKKVRKLKQ  180
RGIDRLGFLG FPFLAKFDKS RFQKSEIDHH FCKIQAKASS KKSKNESSQD AQKLPYVHVR  240
ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKDKM PLNKIDEDPS FFPSGTTNDG  300
SSVLKSQECN SVLLCDLDPS RSISGTALVL DEIINHVQSL QRQVEFLSMR LAAVNPRIDF  360
NLDSILAIDN GSVMDGNLPN MVSSVMWPEF PINGNRQQFQ QQWHFDSLHQ PLWGREEDNQ  420
TFVTPENSLL TYDSSANSAS LHSSQLKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010111436.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031128.1	0.0	transcription factor bHLH48
TrEMBL	W9SIG2	0.0	W9SIG2_9ROSA; Uncharacterized protein
STRING	XP_010111436.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.1	1e-67	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21410694