PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111448.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 759aa    MW: 85049 Da    PI: 6.9315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111448.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.94.6e-1183867571374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk l +++t     ++ l+a++l+  ++P+ k+s+
  XP_010111448.1 386 LRTLLIQCAQAVAADDHRTANELLKQVRQHSSPFGDGNQRLASCFADGLEARLAGTGSQIYKGLVSKKTC---AADMLKAYRLYLAACPFRKMSN 477
                     6789************************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++I++  ++++rvH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpf++n+ +ak++e+
  XP_010111448.1 478 FPSNKTIMQISSKATRVHVIDFGILYGFQWPTFIQRLSMRDGGPPELRITGIEFPQPGfrPAERVEETGRRLATYAETFKVPFKYNA-IAKKWET 571
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+++Vn+ ++ ++lldesvs+es r+ vL+l+++++P+++++   +  +n++ F++rf eal ++sa+fd+le+ +pr + er+
  XP_010111448.1 572 ITVEELKIDKDEVVVVNCLYRGKNLLDESVSVESGRNMVLNLIRKINPDIFIHGIVNGAYNAPFFVTRFREALFHFSAIFDMLETIVPRGEPERM 666
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+e++gre+ nv+aceg  r+er et+++W+ r++++GF ++p++ +++k ++  +r ++ + + ++e+ g+lv+gWk+r ++++S+W+
  XP_010111448.1 667 LIEKEIFGREALNVIACEGWPRVERPETYKQWQIRIMRSGFVQIPFGRDIVKRVSERVRSTYHRDFIIDEDGGWLVQGWKGRIIFALSSWK 757
                     **************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.457360737IPR005202Transcription factor GRAS
PfamPF035141.6E-115386757IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MDPRLRGFSS SINGVHTGNQ PLSVLPNPNV MAVPRFDIIG NNSHNGFLDP SHSRFHYPST  60
DLTPIDSGNS ISGASHEEFS PEDCDFSDTV LKYISQILME EDMGDKTCVL QESLDLQAAE  120
KPFYEVLGKK YPPSPEQNYG YIFNNGDSPD ENFAGNCTNY TTSSYNSREY LGDNTMSQNL  180
SEYTSQLQYL PVYGISQSSY CSSNSGFSSV DGFLDSPSSI IQVPDLSSES QSVWQFQKGV  240
EEASRFLPAR TELFVNLDTN GLSSLDPKGG APTEVSVKVE KKDNGEFSPG GSRGRKNPYR  300
EEEDVEEERS SKLAAVYIES TLRSKMFDLV LLCGNGDGKC HLSSFRETLR NGLSKSMQEN  360
GQLKGSNGRG KGRGKKLGGK KQVVDLRTLL IQCAQAVAAD DHRTANELLK QVRQHSSPFG  420
DGNQRLASCF ADGLEARLAG TGSQIYKGLV SKKTCAADML KAYRLYLAAC PFRKMSNFPS  480
NKTIMQISSK ATRVHVIDFG ILYGFQWPTF IQRLSMRDGG PPELRITGIE FPQPGFRPAE  540
RVEETGRRLA TYAETFKVPF KYNAIAKKWE TITVEELKID KDEVVVVNCL YRGKNLLDES  600
VSVESGRNMV LNLIRKINPD IFIHGIVNGA YNAPFFVTRF REALFHFSAI FDMLETIVPR  660
GEPERMLIEK EIFGREALNV IACEGWPRVE RPETYKQWQI RIMRSGFVQI PFGRDIVKRV  720
SERVRSTYHR DFIIDEDGGW LVQGWKGRII FALSSWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5039275824379Protein SCARECROW
5b3h_D1e-5039275824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111448.20.0scarecrow-like protein 9
RefseqXP_024031224.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLW9S8520.0W9S852_9ROSA; Uncharacterized protein
STRINGXP_010111448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein