PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111449.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 596aa    MW: 67213.6 Da    PI: 8.287
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111449.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07506555147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010111449.1 506 RRPFTVSEVEALVRAVEKLGTGRWRDVKFHAFdnaKHRTYVDLKDKWKTL 555
                      679***********************9999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.9E-6350424IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.824501560IPR017930Myb domain
SuperFamilySSF466899.79E-16503591IPR009057Homeodomain-like
SMARTSM007176.8E-7505558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10506556IPR009057Homeodomain-like
CDDcd116605.96E-17507557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVLQRTSDYR FSGYQVPEVP RACRSTRGRG PTRKSGQNHS FDILASVAGK LLEKYDNSLH  60
SDASIRKNQH YTCDDIVLMK EVDEERLSNE KPLEPGNSSE ETNEKQMLTF EINPTSKDLS  120
PSEIMNYDEK LTILDSKNCF GDSPYFSDTI EGKVQGVPSS KLDAELTETR SSISIKDEII  180
TGDLMKLEGE PSKSAGSRND DAQDSFSKDF KNHCPFTSHI TDEQLVSRDD YESCLGLPMG  240
NANRRIKKTS ETKDWIGAPD VKDCDYRRTD GKVKEVYDDD EKTCYTQEKC QKIYPFKKRK  300
FFYHDPLPTS NRVFNRDDAF VSPDKRTDGK CYTSAIGVSS SMAAQQVGHN SNECNVKLSI  360
KSFKVPELFI DIPTNATVGS LKRTVMEAMT SILGDGLHVG ILVQGKKVRD DNKTLIQTGI  420
SQDSNRRSTC LTSQQGSSNV SLRPPMKHLN GFVENNVSAV PTTLSTSTSP ESKALVTVPE  480
FGMEALAVVP LRRKLGHHEC VQRRIRRPFT VSEVEALVRA VEKLGTGRWR DVKFHAFDNA  540
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL AAQAYWLHRQ SKHRVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-494905961107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290299QKIYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031239.10.0telomere repeat-binding protein 5
SwissprotQ6R0E32e-98TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLW9SWF40.0W9SWF4_9ROSA; Telomere repeat-binding protein 5
STRINGXP_010111449.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-99TRF-like 2