PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111829.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 400aa    MW: 45182.7 Da    PI: 7.2417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111829.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010111829.1 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010111829.1  69 GEFSDEEDRIICSLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788962IPR017930Myb domain
SuperFamilySSF466892.36E-2711109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002498.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241569IPR009057Homeodomain-like
CDDcd001679.77E-101662No hitNo description
PROSITE profilePS5129422.22463117IPR017930Myb domain
SMARTSM007178.3E-1267115IPR001005SANT/Myb domain
PfamPF002492.5E-1169111IPR001005SANT/Myb domain
CDDcd001674.35E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF  120
VNPPDNYNYN HNSQRKLPLV PFPNNDNIII SSTHETTTSC TSSFSLSQPL LMSSLSKNHQ  180
SNYSGYYLTP TSTTRSAFSS SSSSGLDSQV YSNMITSINY SNPSSSSTAS GLFQTQDQYN  240
YLDGNSSYMQ CCYNYPLKEN NLLMFGSEGS CSTSSEGSCN YQIKQEEMGR IHSQDYNMGN  300
LSYDQDHNAI SQRLFMLNSG GSGNGDQYDH NCLNHWGQKS NGCFGETTLD DHQYHVLEDH  360
VKQLISRSST TSNNQGNNYN GYNNFFNIDE NKTQEKVMYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295721e-107KP229572.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB16) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111829.10.0transcription factor RAX2
TrEMBLW9SH520.0W9SH52_9ROSA; Transcription factor RAX2
STRINGXP_010111829.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36