PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010111936.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 410aa MW: 46742.6 Da PI: 5.885

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010111936.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	5	28	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C+ C+k F++ s+Lk H ++ H XP_010111936.1 5 TCNACNKEFTDDSELKLHYKSewH 28 7*****************998666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	8.4E-4	1	35	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	1.7E-7	3	36	No hit	No description
PROSITE profile	PS50157	9.598	4	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	8.1	4	28	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.2E-5	5	29	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.808	68	97	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.017	68	92	No hit	No description
SMART	SM00355	0.75	68	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.43E-7	174	289	No hit	No description
SMART	SM00355	300	187	210	IPR015880	Zinc finger, C2H2-like
Pfam	PF12756	1.9E-26	189	291	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	12	238	265	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MPGLTCNACN KEFTDDSELK LHYKSEWHRY NLKRKVADVP GVTEALFLTR QSALAQEKNK 60 LSETPMLYSC GLCGKGYRSS KAHAQHLQSR SHITRASHGT NHEDEERAII KPLPRRVANK 120 VPPQKEVESE ESEDSEDEWV EVDPEEEFLG EATKSLTGLN VNEQGQQASE DDMDEDDDDK 180 YEGLDPSCCF MCDLEHDTIE SCMVHMHKQH GFFIPDVEYL KDPKGLLTYL GLKIKRDFMC 240 LYCNDRRHPF SSLEAVRKHM VAKSHCKVHY GDGNDEEEVE LEEFYDYSSS YTNEDGKQLV 300 ALGDAVELVG SELVITERSS TRISTKTIGS REFLRYYRQK PRPSPVGDMA ITASLASRYR 360 SMGLATVQSR EQMVRMKVMK AMNRSGVEAM RTKIGMKSNV IRNLPKNVPY

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MPGLTCNACN KEFTDDSELK LHYKSEWHRY NLKRKVADVP GVTEALFLTR QSALAQEKNK  60
LSETPMLYSC GLCGKGYRSS KAHAQHLQSR SHITRASHGT NHEDEERAII KPLPRRVANK  120
VPPQKEVESE ESEDSEDEWV EVDPEEEFLG EATKSLTGLN VNEQGQQASE DDMDEDDDDK  180
YEGLDPSCCF MCDLEHDTIE SCMVHMHKQH GFFIPDVEYL KDPKGLLTYL GLKIKRDFMC  240
LYCNDRRHPF SSLEAVRKHM VAKSHCKVHY GDGNDEEEVE LEEFYDYSSS YTNEDGKQLV  300
ALGDAVELVG SELVITERSS TRISTKTIGS REFLRYYRQK PRPSPVGDMA ITASLASRYR  360
SMGLATVQSR EQMVRMKVMK AMNRSGVEAM RTKIGMKSNV IRNLPKNVPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6qik_z	2e-22	4	379	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z	2e-22	4	379	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z	2e-22	4	379	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z	2e-22	4	379	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z	2e-22	4	379	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
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Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010111936.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102859.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Refseq	XP_010111936.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Swissprot	Q8H1G5	0.0	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	W9SHD6	0.0	W9SHD6_9ROSA; Zinc finger protein
STRING	XP_010102859.1	0.0	(Morus notabilis)
STRING	XP_010111936.1	0.0	(Morus notabilis)

Link Out ? help Back to Top
Entrez Gene	21385867 \| 21387933

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]