PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112031.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 245aa    MW: 28077.3 Da    PI: 6.8594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112031.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-162267348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd++l +++k +  g+W+++a+  g+ R++k+c++rw++yl
   XP_010112031.1 22 PWTAEEDQILMNYIKFHKEGSWTKVAENTGLERSGKSCRLRWRNYL 67
                     8********************************************7 PP
2Myb_DNA-binding491.4e-1573117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + eE++l+++++k+ G++ W++Ia +++ gRt++++k++w++ 
   XP_010112031.1  73 RGNISHEEEDLIIRLHKLIGNR-WSLIAGRLP-GRTDNEIKNYWNTI 117
                      78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8251567IPR017930Myb domain
SuperFamilySSF466895.5E-3017114IPR009057Homeodomain-like
SMARTSM007172.1E-131969IPR001005SANT/Myb domain
PfamPF002495.0E-152267IPR001005SANT/Myb domain
CDDcd001678.53E-122267No hitNo description
Gene3DG3DSA:1.10.10.609.1E-232274IPR009057Homeodomain-like
PROSITE profilePS5129425.06268122IPR017930Myb domain
SMARTSM007172.6E-1572120IPR001005SANT/Myb domain
PfamPF002494.1E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2475121IPR009057Homeodomain-like
CDDcd001673.05E-1177118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRSPSKASS KEFMTMGRKG VPWTAEEDQI LMNYIKFHKE GSWTKVAENT GLERSGKSCR  60
LRWRNYLRPD IKRGNISHEE EDLIIRLHKL IGNRWSLIAG RLPGRTDNEI KNYWNTILKK  120
KKKKVVQPLD TNNQLDDFIQ KSDSSRASTT TDSTTQYHVD HRIDINNQRL TSRDSLLLNS  180
NLVGCDNIII GGLNFTPTTT ENDHDHHNIG HDHDDDIASS DSLGEFCSLS DMINNFDFSN  240
DFLVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26221219107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112031.10.0transcription factor WER
SwissprotQ388509e-50MYB5_ARATH; Transcription repressor MYB5
TrEMBLW9SXW80.0W9SXW8_9ROSA; Transcription repressor
STRINGXP_010112031.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-49myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]