PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010112076.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 476aa MW: 52157.4 Da PI: 6.6109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010112076.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	367	405	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_010112076.1 367 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 405 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.843	356	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.76E-7	366	409	No hit	No description
SuperFamily	SSF47459	1.31E-11	366	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0049	367	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-9	370	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MADEFRTSGN WWDSSRSNRF EAGTSPSSSA LNSLGSFGWS STENMVDMKS RSSMDSVSVS 60 GSSPMVFHDG QKLQGSDSAP TAADPNLHMM GLGLSNSQAI DWNQALFRGE KAAQEGSFRS 120 ILQENMSSNA SFQQEAGQIQ WREKLFSGDH SSSSEFKQMN RGFSLDQSQF SPPYSSGEST 180 VTCQGLSNSS YHQVESAALY GSPSAILMQG LFGPDNSQQQ QSSSSLSLPN YSANYGLNSN 240 DQIMSSTNWS SNSSNKLPQF LRSTTSPPKQ QQPPPPLPPP YNNSHLHFSN NAPFWNAPES 300 AMKDVRATFF PTLQPQFQTA TFDEKPKNIS EVRDSVAVVG KKSGGEAASN KRPRNDQTPS 360 PLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVT VLSTPYMKSG 420 APIQHQQNSE KSKDPEDPKQ DLRSRGLCLV PVSSTFPVTH ETTVDFWTPT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MADEFRTSGN WWDSSRSNRF EAGTSPSSSA LNSLGSFGWS STENMVDMKS RSSMDSVSVS  60
GSSPMVFHDG QKLQGSDSAP TAADPNLHMM GLGLSNSQAI DWNQALFRGE KAAQEGSFRS  120
ILQENMSSNA SFQQEAGQIQ WREKLFSGDH SSSSEFKQMN RGFSLDQSQF SPPYSSGEST  180
VTCQGLSNSS YHQVESAALY GSPSAILMQG LFGPDNSQQQ QSSSSLSLPN YSANYGLNSN  240
DQIMSSTNWS SNSSNKLPQF LRSTTSPPKQ QQPPPPLPPP YNNSHLHFSN NAPFWNAPES  300
AMKDVRATFF PTLQPQFQTA TFDEKPKNIS EVRDSVAVVG KKSGGEAASN KRPRNDQTPS  360
PLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVT VLSTPYMKSG  420
APIQHQQNSE KSKDPEDPKQ DLRSRGLCLV PVSSTFPVTH ETTVDFWTPT FGGTFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010112076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010112076.1	0.0	transcription factor bHLH123
TrEMBL	W9SY08	0.0	W9SY08_9ROSA; Uncharacterized protein
STRING	XP_010112076.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-85	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21386488