PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112224.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 1623aa    MW: 181301 Da    PI: 5.9991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112224.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005415111536123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      +kC    C +sF +k +L++H r+ +
  XP_010112224.1 1511 HKCDidGCRMSFDTKAELNVHKRNrC 1536
                      799999****************9876 PP
2zf-C2H211.60.0008915941620123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg sF+  s++ rH r+  H
  XP_010112224.1 1594 YQCKieGCGLSFRFVSDFSRHRRKtgH 1620
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6891657IPR003349JmjN domain
PfamPF023751.5E-141750IPR003349JmjN domain
SMARTSM005587.5E-42294483IPR003347JmjC domain
SuperFamilySSF511971.59E-25295480No hitNo description
PROSITE profilePS5118433.672297483IPR003347JmjC domain
PfamPF023733.0E-32327466IPR003347JmjC domain
Gene3DG3DSA:3.30.160.601.4E-415021533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.815111533IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7815341563IPR007087Zinc finger, C2H2
SMARTSM003550.6215341558IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.25E-515351567No hitNo description
Gene3DG3DSA:3.30.160.602.9E-415351562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015361558IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-1015631588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.94615641593IPR007087Zinc finger, C2H2
SMARTSM003550.001615641588IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015661588IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-1015741616No hitNo description
Gene3DG3DSA:3.30.160.605.4E-1115891617IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.57715941623IPR007087Zinc finger, C2H2
SMARTSM003550.1915941620IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015961620IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1623 aa     Download sequence    Send to blast
MGNVEIPNWL EGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
FSNLNKSLSK CPELGSVENL SNDCPSSSKT GSLDGSNDGE VRAVFTTRHQ ELGQSVRKTK  120
GGVQNPPLGV QKQVWQSGEI YTLEQFESKS KAFAKSQLGM IKEVSPLVVE AIFWKAACEK  180
PIYLEYANDV PGSGFGEPEG QFRYFHRRRR KRNFYRRSRD NSSCKRDEMV SDRIAVSKTN  240
DVKDSAPKND SDSFVDVSKP PTSLPVLPCN ETPQSSKKKS QNSCHDKEGT AGWKLSNSPW  300
NLQVISRSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHSGSSKTW  360
YSVPGDYAFT FEEVVRSEAY GGNIDRLVVC YYFGIIFVTQ VQFLLLPAAL ALLGEKTTLM  420
SPEVVVASGI PCCRLVQNPG EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ WLKVAKEAAV  480
RRAAMNYLPM LSHQQLLYLL TMSFVSRVPR SLLPGVRSSR LRDRQKEERE LLVKQAFIED  540
ILHENKTLSV LLGKDSSYHA ILWNPDLLTY PSKESLSPIA GATDSTPATE NPQKHNGEQH  600
YLVNEMSLYM ENMNDLYFDC DDLSCDFQVD SGTLACVACG ILGFPFMSVV QPSQKASEEL  660
LHNEHALVQE CQGISGYLNS CSFQDLDASN KCYVAENPPT VSNSSLMVDL PLPSTIMSKN  720
GWNANNKSLR PRSFCLEHAV EIVELLQSKG GANVIVICHS DYQKIKAHAT TIAEEIGSPF  780
NYSEVPLDIA SKDDLNLIDL AIDNEEHDEC GEDWTSKLGI NLRHCVKIRK NSPSKQVQHA  840
LTLGGLFSDK CPSVDFLTIK WQLRRSRSKK ICLPDHFKPC DTIQLKNDVA MGERSLSVKK  900
EKKLIQYSRR NFKKKPGGST GTPKVCVTGA SLGDLDEHNR IVSENNIQND GNSTGFDVSP  960
SYENEIQMLE ATEDENSKDG VACVETQIKN HVLEDTNTGH FAALDDSEME DEPNVETQKV  1020
SSTDELREEQ YASPFVNDTQ KSFQAHEEKQ IVGQFNRVNE VCSLVSERHS EVQVDKDVLD  1080
NTVSKFSKMS CSHVDPCDEN FEGQRANATV DKGCKCDEVC DSLPVEAQGV HATGNKDKKE  1140
FPCNSTAIKD QEQCCEGPRQ SCSAGDSSNH ISLEVKPPQE IRTVINEHSL VSIEEIYEVP  1200
KETCSTEGLG NYACLEVKPE QEIKTTITEV VSASIEKISE IPSDVSAALK LCYSLTSDEE  1260
LQQKLESAAG SSEELASSSV TQTEAHHPCV SAEEYSNVPR GISREEDSGN DVTSDNGSRR  1320
ETLMENPDQG LVSNLAIQAR NQPIPVNVEE FEVTNHAKDH LGDNLTFNNN REREIQSMND  1380
EEKTDLPTAI PFQKYYRVKR DSRSTEDLCI GSEVCSPQDD RELEIIDSNM GKARKRKREL  1440
EQLTESKFSC NGFIRSPCEG LRPRTGKDAA TSSSGIDIDG EVKEKPATKV KKSTNARGPT  1500
KDKKENSRKS HKCDIDGCRM SFDTKAELNV HKRNRCPHEG CGKRFSSHKY AMIHHRVHDD  1560
QRPLKCPWKG CSMSFKWAWA RTEHIRVHTG ERPYQCKIEG CGLSFRFVSD FSRHRRKTGH  1620
YVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-53295497160346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-53295497160346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1901914KKLIQYSRRNFKKK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031706.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLW9SA500.0W9SA50_9ROSA; Putative lysine-specific demethylase ELF6
STRINGXP_010112224.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]