PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112230.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 292aa    MW: 33123.7 Da    PI: 9.2051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112230.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+ Ed++l d+++ +G g+W+  ++  g++R++k+c++rw +yl
   XP_010112230.1 14 KGIWTKLEDKILTDYITVHGEGNWNNLPKLAGLKRCGKSCRLRWMNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.86.7e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+++ +k+ G++ W++Iar+++  Rt++++k++w++ 
   XP_010112230.1  67 RGNISPDEEDLIIRMHKLVGNR-WSLIARRLP-ERTDNEIKNYWNTN 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.282961IPR017930Myb domain
SuperFamilySSF466891.38E-2711108IPR009057Homeodomain-like
SMARTSM007172.1E-111363IPR001005SANT/Myb domain
PfamPF002492.5E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-221668IPR009057Homeodomain-like
CDDcd001677.75E-91761No hitNo description
PROSITE profilePS5129424.40562116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1367112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2469116IPR009057Homeodomain-like
CDDcd001674.49E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRRPYCSKV GLNKGIWTKL EDKILTDYIT VHGEGNWNNL PKLAGLKRCG KSCRLRWMNY  60
LRPDIKRGNI SPDEEDLIIR MHKLVGNRWS LIARRLPERT DNEIKNYWNT NLRKKLEPPR  120
TSKVTKSKRK FTKEKRPKQA LGPKNSVESS PPAPPVKPIR TKAFRVVTRK TQTLIRPTEI  180
KIPSGVDEEG EKSNGEIMVN CHLIGDGEPA QEVANLMIEY SCAGPQMNDT TIGPSSDHAS  240
SSPMWDEQGL GEWFNSSSSN CNGFITSSFE EDLNLMDFLS VANFLDFDEE LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127137KRKFTKEKRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112230.10.0transcription repressor MYB6
TrEMBLW9SA940.0W9SA94_9ROSA; Transcription factor
STRINGXP_010112230.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-57myb domain protein 3