PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112364.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 412aa    MW: 47957.2 Da    PI: 6.7799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112364.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-201454646
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    ++ r +tf+kR++g+lKKA+ELS+LCd++v+vii+ +t++l
  XP_010112364.1 14 ERARRITFAKRKKGLLKKAYELSTLCDVKVCVIIYDTTNQL 54
                    67899********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-20171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.969154IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-21160IPR002100Transcription factor, MADS-box
CDDcd001203.85E-21254No hitNo description
PRINTSPR004045.7E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGRGTLPLRL IPKERARRIT FAKRKKGLLK KAYELSTLCD VKVCVIIYDT TNQLSDDHHY  60
HHQHDHRHDY HHQQAVYEPI HTWPEQPHEV ESIIAKYLAY KAKNPVSKKD LDIADFFKEK  120
IKKIQHDTKK LAEENKIKKI MMLKSGSTDH HQDHHDYDQF DLLWDNRIDG FSLTQLLDLM  180
THLDNRISDA NNHWTDRYNS NMMIMCMTPH DKYYYDIDHH GHHSNYQFGS TSMSPMMGNS  240
YQTSSEYRDN YNNNHELVLF PQYDHYYDPQ YYWPHDQPAS SSKTVPFDHH SSFTSMMLNG  300
HDPTDYNEDI DCQYYSNLLN IGTKMFNNNN TSVGAVTNAM NTDHDHVVLH HQNGVFLNNH  360
ADVAMQPYGM PLFGGTAADG SGYSPAGNQF RASSSQQDVK FCDNQLHGFG RV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KERARRITFAKRKK
21425RARRITFAKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9SAQ30.0W9SAQ3_9ROSA; MADS-box protein
STRINGXP_010112364.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-13AGAMOUS-like 17