PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112475.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 253aa    MW: 29406.6 Da    PI: 7.236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112475.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151559448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     W +eEd++l+++v+ +G g+W+t+++  g+ R +k+c++rw +yl
   XP_010112475.1 15 WKPEEDLILKKYVETHGEGNWATVSQQSGLMRGGKSCRLRWKNYL 59
                     *******************************************97 PP
2Myb_DNA-binding52.88.9e-1765110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010112475.1  65 RGEMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                      8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223759IPR017930Myb domain
SMARTSM007171.7E-111161IPR001005SANT/Myb domain
SuperFamilySSF466899.9E-2811106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-211466IPR009057Homeodomain-like
CDDcd001671.50E-91559No hitNo description
PfamPF002491.7E-131559IPR001005SANT/Myb domain
PROSITE profilePS5129425.50260114IPR017930Myb domain
SMARTSM007171.1E-1664112IPR001005SANT/Myb domain
PfamPF002495.1E-1565110IPR001005SANT/Myb domain
CDDcd001671.99E-1167110No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2367116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEDTREKKQP KKHLWKPEED LILKKYVETH GEGNWATVSQ QSGLMRGGKS CRLRWKNYLR  60
PNIKRGEMSQ EEQDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRCQWGKRK  120
HTDSNGDKND SNGSKTNNKE NKTDNPHPTT SESQKNTTER SVERKEEEKS AALIPFMDDT  180
NGFNFDIESP IMTPANSSMF VFDDEPFTTY MDSFLLFEAF GYTAGEESYA ECNHSNDLCH  240
SQYMTLSTYS SRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-211511410108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112475.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296131e-106KP229613.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB57) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112475.10.0transcription factor MYB82
SwissprotQ9LTF72e-65MYB82_ARATH; Transcription factor MYB82
TrEMBLW9SZ250.0W9SZ25_9ROSA; Transcription factor
STRINGXP_010112475.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-65myb domain protein 82