PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112565.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 661aa    MW: 73946.3 Da    PI: 5.7893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112565.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.66.5e-1292786462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++ L++c+ea+ s++ + +++++a+l +lasp+g +p+ Rl+ay+teALa r+ar +++++++ pp+e + +  +++ + l+++++v+Pi+kf h
  XP_010112565.1 278 ISFLTACVEAIGSKSVHGISHYIAKLGDLASPRGiSPLSRLTAYYTEALALRVARIWPQIFHITPPREFE-RLDEDSGSPLRFLNQVTPIPKFLH 371
                     678******************************************************************8.55677778899************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+ +l+a+eg++rvHiiDfdi +GlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++
  XP_010112565.1 372 FTSNELLLRAFEGKDRVHIIDFDIRKGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVR 461
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                     l++L+vk++E++aVn+v+qlh++l ++       +++L l++s++P+vvv++eqea+hn++++  r++++l+yysa+fd++ +++lp +s  rik
  XP_010112565.1 462 LWMLHVKEQESVAVNCVFQLHKTLYDPNGGVF--RDFLGLIRSTNPTVVVMAEQEAEHNDPRLEVRVCNSLKYYSAIFDCIdASQLPLDSGVRIK 554
                     ************************88777666..89*********************************************8899********** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslv.lgWkdrpLvsvSaWr 374
                     vE++ ++rei+n+vace  +r+erhe++ekWr+++ee GF++++++e++++q +lll++++ + y+v+e+  +g+++ lgW+d+pL++vSaW+
  XP_010112565.1 555 VEEM-FAREIRNIVACERGDRVERHERFEKWRRMMEEGGFRSARIGEREVMQSRLLLKMYSCEDYNVKEQgqDGAAItLGWQDQPLFTVSAWT 646
                     ****.********************************************************888****7766555555**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.938251623IPR005202Transcription factor GRAS
PfamPF035142.2E-126278646IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLAGCSSSST LLSPRHRLRS EAPAQFQACH FPMSTQRLDL PCSFSRKETS RPPQPIRPPV  60
VGLSVEKQIE FESKKKKSTA ACSLKQSIRL PPLATTAATV PAQKETKSLK RQGSVDESVL  120
SSRAKRIRGF QDDHEEEEIL RSSLGQLGTT GNFWLNPQVP FSLTTFSGGE EEEEERVCYV  180
SSPTLPPLSN NAWLDSVVTE ITEGETSHGH GQGRETSGAS SASSESQRLA LRLNEAVPEY  240
EVGNGSSRNP YYGGSGVVEA EEDEDIRIRG ENEGFELISF LTACVEAIGS KSVHGISHYI  300
AKLGDLASPR GISPLSRLTA YYTEALALRV ARIWPQIFHI TPPREFERLD EDSGSPLRFL  360
NQVTPIPKFL HFTSNELLLR AFEGKDRVHI IDFDIRKGLQ WPSLFQSLAS RTNPPSHVRI  420
TGIGESKQEL NETGDRLAGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEQ ESVAVNCVFQ  480
LHKTLYDPNG GVFRDFLGLI RSTNPTVVVM AEQEAEHNDP RLEVRVCNSL KYYSAIFDCI  540
DASQLPLDSG VRIKVEEMFA REIRNIVACE RGDRVERHER FEKWRRMMEE GGFRSARIGE  600
REVMQSRLLL KMYSCEDYNV KEQGQDGAAI TLGWQDQPLF TVSAWTPVDL AGSSSSFSQP  660
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-682626474380Protein SCARECROW
5b3h_A6e-682626473379Protein SCARECROW
5b3h_D6e-682626473379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112565.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLW9SZ920.0W9SZ92_9ROSA; Uncharacterized protein
STRINGXP_010112565.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein