PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112600.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36528.9 Da    PI: 4.4179
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112600.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-1998151356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_010112600.1  98 KKRRLSVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 151
                     556899***********************************************9 PP
2HD-ZIP_I/II131.33.7e-4298188292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrls eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ e+L+ke+++L++e++
  XP_010112600.1  98 KKRRLSVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQATHNTLKDDYESLRKETDKLKAEVH 188
                     9**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2087155IPR009057Homeodomain-like
PROSITE profilePS5007117.26593153IPR001356Homeobox domain
SMARTSM003894.3E-1995157IPR001356Homeobox domain
CDDcd000861.05E-1696154No hitNo description
PfamPF000469.3E-1798151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-20100160IPR009057Homeodomain-like
PRINTSPR000319.3E-6124133IPR000047Helix-turn-helix motif
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PRINTSPR000319.3E-6133149IPR000047Helix-turn-helix motif
PfamPF021836.1E-14153195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGGRIFGGG AAGGSSSSSS LGLLLQNNKR TEPLDSLFLS GSCNSSSSSP SFFASRSMMS  60
FEDVHGGNGS NKTYFRSFGG GDDIVDDDFD EYFQQPGKKR RLSVEQVQFL EKSFEVENKL  120
EPERKVQLAK DLGLQPRQVA IWFQNRRARW KTKQLEKDYD VLQATHNTLK DDYESLRKET  180
DKLKAEVHVL SEKLQEREKE KENLELSENS NKLSQEPPEK PIADSEGEVS KVSAVEDISS  240
SVKSDIFDSD SPRFNEAVHS NSLLEPGDSS YVFEADQSDL SQDEEDNLPS YIFPKLEDVD  300
YSDKPTSSCN FGFPVEDHAF WSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129GGRIFGGG
2145153RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112600.10.0homeobox-leucine zipper protein HAT5
TrEMBLW9SZC20.0W9SZC2_9ROSA; Homeobox-leucine zipper protein HAT5
STRINGXP_010112600.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-41homeobox 1