PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112622.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 171aa    MW: 19340.9 Da    PI: 9.7333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112622.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.12.8e-16103150159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++pr           vkk+++r ++d ++v++tYeg Hnh+
  XP_010112622.1 103 LDDGYRWRKYGQKTVKNNPHPR-----------VKKQIQRLSRDSRIVVTTYEGVHNHH 150
                     59*******************9...........8************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-1990150IPR003657WRKY domain
SuperFamilySSF1182909.94E-1895150IPR003657WRKY domain
PROSITE profilePS5081119.88798152IPR003657WRKY domain
SMARTSM007741.1E-21103151IPR003657WRKY domain
PfamPF031063.5E-11104150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDQELIPSLD PLSDILNNGP ISLPMPSQFS PDMLDWFDLF GGSDISCDHN KASSASHVSA  60
KAKNIASEGD KSTSGENKAK VFRKKKAIPQ RIAFHTRSDD DVLDDGYRWR KYGQKTVKNN  120
PHPRVKKQIQ RLSRDSRIVV TTYEGVHNHH CEKLMESLGP LLKQLQFLSR I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-1893149774Probable WRKY transcription factor 4
2lex_A8e-1893149774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112622.11e-125probable WRKY transcription factor 43
SwissprotQ8VWQ41e-44WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLW9SLK01e-124W9SLK0_9ROSA; Putative WRKY transcription factor 56
STRINGXP_010112622.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-46WRKY DNA-binding protein 56