PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112641.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 361aa    MW: 40373.6 Da    PI: 6.1874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112641.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-164592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell+  +++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_010112641.1 45 RGPWTAEEDELLASFIRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 92
                     89******************************99************97 PP
2Myb_DNA-binding482.8e-1598143148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010112641.1  98 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 143
                      678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-203794IPR009057Homeodomain-like
PROSITE profilePS5129415.3034092IPR017930Myb domain
SuperFamilySSF466896.97E-2842139IPR009057Homeodomain-like
SMARTSM007172.1E-124494IPR001005SANT/Myb domain
PfamPF002491.1E-144592IPR001005SANT/Myb domain
CDDcd001673.55E-104792No hitNo description
PROSITE profilePS5129424.57893147IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2495148IPR009057Homeodomain-like
SMARTSM007173.4E-1497145IPR001005SANT/Myb domain
PfamPF002498.7E-1499143IPR001005SANT/Myb domain
CDDcd001672.55E-11103143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRKPEGKTTN CNKKIIMTSN NDDNEKKISS SKTTTACCSK VGIKRGPWTA EEDELLASFI  60
RREGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGR IAPDEEDLIL RLHRLLGNRW  120
SLIAGRIPGR TDNEIKNYWN THLSKKLISQ GIDPRTHKPL NPDDHDTNNL LPSSSSSKTN  180
HHIFEYPNPN NSTIQNPTVG EDQTTRSGAV GIQTHNKDNS YDQLVDADDL GPDQFQNTGK  240
VVNFRHGYEN LPGNLYGSEV GFGSITNNSL VVGNHEEDMN NIDDDLNCCD DDVLSSFLNS  300
LINEDAFSGA QVLQPNGLIT PFSTDAPFDF VSVNTTCTNG WESAITSRAN DSEKVDDHRV  360
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-25451474105C-Myb DNA-Binding Domain
1msf_C8e-25451474105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112641.20.0transcription repressor MYB5
SwissprotQ388501e-81MYB5_ARATH; Transcription repressor MYB5
TrEMBLW9SJ700.0W9SJ70_9ROSA; Transcription repressor
STRINGXP_010112641.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-79myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]