PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112723.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 712aa    MW: 79493.5 Da    PI: 6.644
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112723.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23140240198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd++++g +++pk++a+++       ++++   ++l+ +d++g +W +++i+r++++r++lt+GW+ F ++++L +gD ++F   + +
  XP_010112723.1 140 FSKTLTPSDTSTHGGFSVPKRYADKCfpqldmsQQPP--VQELVAKDLQGFEWHFRHIFRGQPKRHLLTSGWSTFISSKKLITGDACIFL--RGE 230
                     88****************************9644443..458************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+ 
  XP_010112723.1 231 NGELRVGVRH 240
                     9999***985 PP
2Auxin_resp96.63.6e-32268350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+st+++F+v+Y+P++s++ F++++++++k+ +++  +G+Rf++ +e+e++ e+r++Gtvvgv+d dp+rWpnS+Wr+Lk
  XP_010112723.1 268 AFHAISTGTIFTVYYRPWTSPAHFMIPRDQYLKSADREHLAGTRFRFDLEGEECIEKRFTGTVVGVEDHDPIRWPNSEWRCLK 350
                     689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-37132270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-37135251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-21138239No hitNo description
PfamPF023626.6E-21140240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802140242IPR003340B3 DNA binding domain
SMARTSM010191.1E-20140242IPR003340B3 DNA binding domain
PfamPF065071.3E-28268350IPR010525Auxin response factor
PROSITE profilePS5174513.486618703IPR000270PB1 domain
SuperFamilySSF542773.78E-6620682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MGGTEGATKE SKRCSGSANS PANNNNKGDD EIDDLYIELW HACAGPHSHV PRLGEKVYYF  60
PQGHVEQVQA YANQDGNMEM PIYNLPSKIL CKVVYIQLKA EAHTDEVYAQ ITLLPLTEQE  120
LSLEDEEVLP FPQKSSAFSF SKTLTPSDTS THGGFSVPKR YADKCFPQLD MSQQPPVQEL  180
VAKDLQGFEW HFRHIFRGQP KRHLLTSGWS TFISSKKLIT GDACIFLRGE NGELRVGVRH  240
AMNRRIPSNT STSVISGHSM QHGILASAFH AISTGTIFTV YYRPWTSPAH FMIPRDQYLK  300
SADREHLAGT RFRFDLEGEE CIEKRFTGTV VGVEDHDPIR WPNSEWRCLK VKWDASSNMS  360
SLPDRLSPWS IKPTDSTHNA DAFLRSPPKR GRELDLSSPG FSSLAREGFL LSSVKRIMPQ  420
RQKEVLQGQE ISNVHVHEPG AKMAPMLPQF IMPPNPNWKS LLQLENHLQF PMQAQVYQCP  480
RGEIAFPGET MVPSSLTNQL CSKFATYSRS FSVSNGNSTN SGSQEFAEQR SNDEAPRQPN  540
GCGKYMLFGV NLFHGHPELP SPQVATSNEL LSSFSLPPTS QSSVSEPPVH VSDSSNNNSV  600
FGLLSEKQCK QCCSITNRSC SKVLKHGTAL GRSVDLTNFG GYEELISELD EMFEFNGSLI  660
DGSSGWKVTY MDDEGDLMMF RSAARRMFIC PKEEINKMNP GSLKSTISLL DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1373337617357Auxin response factor 1
4ldw_A1e-1373337617357Auxin response factor 1
4ldw_B1e-1373337617357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032050.10.0auxin response factor 2A
TrEMBLW9SBI60.0W9SBI6_9ROSA; Auxin response factor
STRINGXP_010112723.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-156auxin response factor 2