PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112745.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CO-like
Protein Properties Length: 365aa    MW: 41198.9 Da    PI: 5.5997
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112745.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07647237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                    + r C+ +++  + l+C+ ++  lC +C  e H g       H
  XP_010112745.1  6 QRRLCDYCDDTTAVLYCRADSAKLCFSCDREVH-GtnqlfakH 47
                    7899******99*********************.435566666 PP
2zf-B_box28.33.7e-095092340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvv 40
                     + C+ +++ ++++fC+  ++ lC++C  e H++     H ++
  XP_010112745.1 50 SQLCDACDDAPASIFCTAESSVLCQNCDWERHNDtvsvvHHRR 92
                    578*****************************77888886655 PP
3CCT62.41.4e-21321363143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Re a++RYkeKrktR++eK+irYesRK++AesR R+KGrF+k 
  XP_010112745.1 321 RETAISRYKEKRKTRRYEKRIRYESRKVRAESRTRIKGRFAKI 363
                     99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.993552IPR000315B-box-type zinc finger
SMARTSM003365.1E-12552IPR000315B-box-type zinc finger
PfamPF006432.9E-5647IPR000315B-box-type zinc finger
CDDcd000213.23E-5838No hitNo description
PROSITE profilePS5011910.5944894IPR000315B-box-type zinc finger
PfamPF006432.3E-65188IPR000315B-box-type zinc finger
CDDcd000214.42E-65294No hitNo description
SMARTSM003360.435394IPR000315B-box-type zinc finger
PROSITE profilePS5101715.1321363IPR010402CCT domain
PfamPF062032.0E-15321362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTTSSQRRLC DYCDDTTAVL YCRADSAKLC FSCDREVHGT NQLFAKHARS QLCDACDDAP  60
ASIFCTAESS VLCQNCDWER HNDTVSVVHH RRPLEGFNGC PSVTELLAIL GFEDVDKKGL  120
FWAEENGFFD RSSDLLMWDV PSVVGLDDLI VSDSSRSFQA MGIPPLPKNR NAVCGQHKEE  180
ILSQLRELAK KEPDSSNYEN VDLESLLGFE AIVPDPVQPG KMCVGSHCEA EEEPNTFSAF  240
EARTCQWCIN CSSENVHQDV VPQTSSTSRL QESCRDSEKH SDMMGDSVSH ANDAHNQHPV  300
DSNALPDFPK TFPCELTSQE RETAISRYKE KRKTRRYEKR IRYESRKVRA ESRTRIKGRF  360
AKIGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112745.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLW9SZQ50.0W9SZQ5_9ROSA; Zinc finger protein CONSTANS-LIKE 13
STRINGXP_010112745.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-80B-box type zinc finger protein with CCT domain