PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113028.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 836aa    MW: 90426.9 Da    PI: 6.0011
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113028.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.42.5e-1274648232374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs++++ +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +  ++++ ++a+++f+ +sP++kfsh+
  XP_010113028.1 464 LTLLLQCAEAVSADNFDEANKILLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPATSIPIIHTQKMASAFQVFNGISPFVKFSHF 558
                     579******************************************************************999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++
  XP_010113028.1 559 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP-VAEKVGNLDP 648
                     *****************************************************....***************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE
  XP_010113028.1 649 ERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVE 736
                     ****************9..999999999999....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  XP_010113028.1 737 QQLLSREIRNVLAVGGPARSGDVK-FHNWREKLQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 823
                     ******************988887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.909437803IPR005202Transcription factor GRAS
PfamPF035148.7E-125464823IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAAIDNAGGD TSTDVSGSNS SNNNNKNSTK STHVGASLPV TGVCSSISTG SSNSSEEKTT  60
TNRQKTVGGG KMVRKRMASE MEAVQTATTA AADYLRLSRR SSTVATTCAA ATMTIGFSFP  120
TVVNEGDDND DVVFNSNNNN NISSNQMSRV MSSVVPNYST MLAPPLLPPP SPQPQQQCST  180
NLTNLTSGGV LSCSSAFIDQ SNPIQLHQYN QYPQRSQPQP PTTTQSPAVC GFSGLPLFPP  240
ETSRETNSSS ANNNSIPSPS SGTLRTTTTS TTSSMEDNNH NNNNHHNTNN NNNSAATAWI  300
DGIIKDLIHS SSNVSIPQLI QNVRDIIFPC NPNLATLLEY RLRSIISEST APPLMSNLPI  360
TTSSPSPSSQ PTFGPDHMYL HWGGTVGAGV IPTILPPAVE EVHNQHQHQQ QEQENSSPKM  420
EEVITTTATT ATITTPPSNQ ALLIREKKEE LRQQKRDEEG LHLLTLLLQC AEAVSADNFD  480
EANKILLEIS ELSTPFGTSA QRVAAYFSEA MSARLVSSCL GIYAALPATS IPIIHTQKMA  540
SAFQVFNGIS PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG  600
PPYVRLTGLG TSMEALEATG KRLSDFADKL GLPFEFFPVA EKVGNLDPER LNVSKREAVA  660
VHWLQHSLYD VTGSDTNTLW LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA IHYYSALFDS  720
LGASYGEESE ERHVVEQQLL SREIRNVLAV GGPARSGDVK FHNWREKLQQ SGFRGISLAG  780
NAATQATLLL GMFPSDGYTL VEDNGTLKLG WKDLCLLTAS AWRPAAFHAT AATLHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04478243380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113028.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLW9SCD50.0W9SCD5_9ROSA; Uncharacterized protein
STRINGXP_010113028.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein