PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113169.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 234aa    MW: 27239.6 Da    PI: 8.3525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113169.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.1e-202067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++v+++G g+W+++ar+ g++R++k+c++rw +yl
   XP_010113169.1 20 KGPWTPEEDKLLSEYVNLHGEGRWSSVARCAGLNRSGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding50.93.6e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
   XP_010113169.1  73 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 117
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9561567IPR017930Myb domain
SuperFamilySSF466894.49E-3217114IPR009057Homeodomain-like
SMARTSM007173.9E-181969IPR001005SANT/Myb domain
PfamPF002492.5E-192067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-252174IPR009057Homeodomain-like
CDDcd001677.34E-132267No hitNo description
PROSITE profilePS5129424.34368122IPR017930Myb domain
SMARTSM007171.1E-1372120IPR001005SANT/Myb domain
PfamPF002494.5E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2475121IPR009057Homeodomain-like
CDDcd001672.15E-977118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVAMTMGLGV LNIQEQGWKK GPWTPEEDKL LSEYVNLHGE GRWSSVARCA GLNRSGKSCR  60
LRWVNYLRPG LKRGQITPQE EGIIIELHAL WGNKWSTIAR YLPGRTDNEI KNFWRTHFKK  120
KEKSSLKQQK RRSQILKDKF QKDQLQAQQE NTHHTKTTTA SEEKLNIHDH HHQSQDQTTT  180
THEHHDMAFS VNGSDHQCLP VMYQDLVSCS WYDATPDQEY VLWGGLWNLD DPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-242012127127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKQQKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113169.11e-177myb-related protein 305
SwissprotQ9LX821e-50MYB48_ARATH; Transcription factor MYB48
TrEMBLW9SN561e-176W9SN56_9ROSA; Transcription factor
STRINGXP_010113169.11e-176(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.16e-70myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]