PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113358.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WOX
Protein Properties Length: 293aa    MW: 32585.5 Da    PI: 6.3156
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113358.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-2043104257
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+t+t++q+++L+el+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  XP_010113358.1  43 STRWTPTSDQIRILKELYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 104
                     58****************98678*************************************97 PP
2Wus_type_Homeobox113.79.3e-3742106265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_010113358.1  42 SSTRWTPTSDQIRILKELYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 106
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1225106IPR009057Homeodomain-like
PROSITE profilePS5007110.65739105IPR001356Homeobox domain
SMARTSM003896.2E-641109IPR001356Homeobox domain
CDDcd000862.18E-744106No hitNo description
Gene3DG3DSA:1.10.10.601.2E-744104IPR009057Homeodomain-like
PfamPF000468.0E-1844104IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDPNHDQQNQ LPSNDHHHQQ ETSTKGSSGG GGGGSGFLCR QSSTRWTPTS DQIRILKELY  60
YNNGVRSPSA EQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTS DNINMQRSPA  120
AGAAAALIPN VVSSGSSSAS MLGVNGQMGH YGYGAVTMEK TFRDCGSSES ISHGFGWVGV  180
DPYNSSPYAL FEKRSSNIPL DPYDQEYHYQ QQEDDDDDDH GHHETFGNIE TLPLFPMHSE  240
EDMMMINGYN NMIKSNFSDP TATAGGGYYS GSHVSSRTSL ELTLNSYRSP DSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032814.10.0LOW QUALITY PROTEIN: protein WUSCHEL
SwissprotQ8LL116e-69WUS_PETHY; Protein WUSCHEL
TrEMBLW9T0T90.0W9T0T9_9ROSA; Protein WUSCHEL
STRINGXP_010113358.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-41WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]