PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010113371.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 505aa MW: 55256.4 Da PI: 8.5942

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010113371.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.5e-06	452	474	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C++ H+ XP_010113371.1 452 KPCAYFKTSKGCRNGANCPYQHD 474 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.061	448	476	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	452	475	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MRTNRKRSRK SNGVSWAPGA DLCQVRLFSA EDCPAKVGLK CQDDLQAKTS GVLPSDPTGY 60 NELPPGFERG LAVNKSGLEP SYVPQVQWKC PPKFVLSQTW LVAAGEESEE VKHQKLREMR 120 VLEAVYPRSS AIPHSSYVSL ESENEYYDNS RTPIVPITPI EDEEPADTVT PSDVAPSVNT 180 TTISSPPPSS LSQVSLPSES HPSKCNSSFL QSLGTSQPPL EKLPDRGADV LAATSAALAT 240 IMKSSEKGSL IDTDLLIKIF SDPKMIGRLM NNGQPTSAPS VSTKTTVSAS ISDSRTVSPS 300 VPLPSPALDL QRPVDENSFH PNGLRTTVNT TRRQQDAPQV SRFQQVVTPP VSMSTPEPFV 360 SLPRLPDGNL FSVPNRVRYL VNAASVQPNT AFAVQERAPP VKDVNYYKNL IRQHGGEHEE 420 NKDCVLTQNG KNYFHLGVQN FKLGQEKPKN SKPCAYFKTS KGCRNGANCP YQHDVSLPWQ 480 SGKVMESYRA KRMKLNGEIN GVMLV

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MRTNRKRSRK SNGVSWAPGA DLCQVRLFSA EDCPAKVGLK CQDDLQAKTS GVLPSDPTGY  60
NELPPGFERG LAVNKSGLEP SYVPQVQWKC PPKFVLSQTW LVAAGEESEE VKHQKLREMR  120
VLEAVYPRSS AIPHSSYVSL ESENEYYDNS RTPIVPITPI EDEEPADTVT PSDVAPSVNT  180
TTISSPPPSS LSQVSLPSES HPSKCNSSFL QSLGTSQPPL EKLPDRGADV LAATSAALAT  240
IMKSSEKGSL IDTDLLIKIF SDPKMIGRLM NNGQPTSAPS VSTKTTVSAS ISDSRTVSPS  300
VPLPSPALDL QRPVDENSFH PNGLRTTVNT TRRQQDAPQV SRFQQVVTPP VSMSTPEPFV  360
SLPRLPDGNL FSVPNRVRYL VNAASVQPNT AFAVQERAPP VKDVNYYKNL IRQHGGEHEE  420
NKDCVLTQNG KNYFHLGVQN FKLGQEKPKN SKPCAYFKTS KGCRNGANCP YQHDVSLPWQ  480
SGKVMESYRA KRMKLNGEIN GVMLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010113371.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010113371.1	0.0	zinc finger CCCH domain-containing protein 30
TrEMBL	W9SCT2	0.0	W9SCT2_9ROSA; Zinc finger CCCH domain-containing protein 30
STRING	XP_010113371.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9

Link Out ? help Back to Top
Entrez Gene	21409348