PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113419.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 505aa    MW: 57470.9 Da    PI: 10.0526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113419.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.1e-18221141100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ +++ +l+++ l +p+kf++ +g     s ++ le + g +Wev+l  +k+ g++++ kGW +F k   L  gD +vF+++g+s+f  +v 
  XP_010113419.1  22 FFKIILKE-TLNNNKLQIPNKFLRLYGDT--LSGKVCLELPCGLRWEVRL--TKSNGKVWMDKGWTDFSKYYSLGHGDLLVFRYEGNSKF--HVL 109
                     56666554.555666********999855..7789***************..**********************************9999..*** PP

                     EE-SS CS
              B3  96 vfrks 100
                     +f+ks
  XP_010113419.1 110 IFDKS 114
                     **985 PP
2B347.72.8e-15402495199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f  +l  s+++k++ l lp  f ++  +gk +   +  + +  + sW v+l    +++ y +++GW  F+k+  L+ gD+++F+l++r++  l+v
  XP_010113419.1 402 FTVTLGASYTTKRCDLNLPTAFSKNSfEGK-A---KTAILQVGNISWPVEL--LHYPSDYKFSRGWYAFAKEMSLRPGDVCIFELIDRNKLVLKV 490
                     56677889**************96665333.3...345566789*******..999999***************************999999999 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++f +
  XP_010113419.1 491 SIFGQ 495
                     99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-2419121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-2520114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1920112No hitNo description
PROSITE profilePS5086314.38121114IPR003340B3 DNA binding domain
SMARTSM010192.6E-1522114IPR003340B3 DNA binding domain
PfamPF023628.8E-1523113IPR003340B3 DNA binding domain
CDDcd100171.36E-6252320No hitNo description
SuperFamilySSF1019366.87E-7253310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-6255305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-19395495IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-20395496IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-15400493No hitNo description
PROSITE profilePS5086312.421402496IPR003340B3 DNA binding domain
SMARTSM010193.8E-16402496IPR003340B3 DNA binding domain
PfamPF023629.8E-13402495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNVCGNEKDD VQTKFSLIIP HFFKIILKET LNNNKLQIPN KFLRLYGDTL SGKVCLELPC  60
GLRWEVRLTK SNGKVWMDKG WTDFSKYYSL GHGDLLVFRY EGNSKFHVLI FDKSTTEIDY  120
PSNPNRFEKH DDTDRKPHEF CVEEGIEDDD SVVEVPETFL PHPKTREKSP IPCPRPHKRA  180
RTNRHVDKTQ SNQSYQRPKA DNINFPTKGG GGEKSVPPRR KKCGDTRKKL LTAKEMAKAL  240
RRASGFKSKD PFSKVKFVMQ PSYVGAECTS LWLPSFFVKK YLKSKHADVI LKAPDGRTWS  300
VKYTFGVHEE TPEGKFYLST DILFEVYIFR ENGNSTMLPV HKAAASKVRP KGSLSSKVEA  360
GNTINKKTEM SAPETCRKPL TINKKARALE TASGYQSENP FFTVTLGASY TTKRCDLNLP  420
TAFSKNSFEG KAKTAILQVG NISWPVELLH YPSDYKFSRG WYAFAKEMSL RPGDVCIFEL  480
IDRNKLVLKV SIFGQNRTKT LNVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-2037749624143B3 domain-containing transcription factor VRN1
4i1k_B2e-2037749624143B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9SKQ90.0W9SKQ9_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010113419.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-38B3 family protein