PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518703.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 507aa    MW: 56050.4 Da    PI: 7.7626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp+ ++ LCnaCG ++r kg+
  XP_010518703.1  7 CYHCGVTSTPLWRNGPSEKPVLCNACGSRWRTKGT 41
                    *****************9999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12545No hitNo description
CDDcd002026.19E-17651No hitNo description
PROSITE profilePS5011411.451740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-13741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003203.3E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.2E-9269359IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPSEKPVLCN ACGSRWRTKG TLANYTPLHA RADAEENEDH  60
RVQRLKSLSV NKNKEAKMLK RKADQENVTV KRVSPEFNHG FKKVVDEDAG NRSSSGSAIS  120
NSESCAQLGS VDGSEFTGPA QSNVWDTSVP CKRRTWVGRP KPSSVEKLRK DLYNILQEQQ  180
SSCFSGSSEE DLLFENETPM VSVEIGHGSV LMRHPHLVSR EEESEASSLS VENKSSLNES  240
YSHSGKSISN GAAKAPNFAG QAIQQEQLKR TKSQTEKLSV LGSHSSPLCS IDLKDVFNFD  300
EFTGQFTEDE QRQLMKLLPQ TESVNFPDSL RSMFESDQFK ENFSLFQQLV ADGVFESSSS  360
SGAIPDDRKM LKKLALSDLT KSRLVESYHQ FKEHKNGKVG TSTATTRIQN QNASNNLISI  420
KRLSESQNRK KSETRAVMRS PKRVMKLQMN QEAAENGFSP RSVAFAFASD GSSAVFGYEG  480
NCGSEQDLLL DVPLNGSFPQ AELLPQP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518703.10.0PREDICTED: GATA transcription factor 26-like isoform X1
RefseqXP_019056221.10.0PREDICTED: GATA transcription factor 26-like isoform X2
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGXP_010518703.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26