PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518783.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WOX
Protein Properties Length: 312aa    MW: 34743.7 Da    PI: 6.8314
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.4e-1762121256
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                     ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k
  XP_010518783.1  62 KPRWNPKPEQIQILESIFNSgMINPPRDEIKKIRIRLqeygQVGDANVFYWFQNRKSRTK 121
                     89*****************99*************************************99 PP
2Wus_type_Homeobox109.61.8e-3561123264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+ +P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R ++k
     XP_010518783.1  61 PKPRWNPKPEQIQILESIFNSGMINPPRDEIKKIRIRLQEYGQVGDANVFYWFQNRKSRTKHK 123
                        579**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.79958123IPR001356Homeobox domain
SuperFamilySSF466892.82E-1259128IPR009057Homeodomain-like
SMARTSM003897.6E-760127IPR001356Homeobox domain
CDDcd000866.22E-861123No hitNo description
PfamPF000461.5E-1462122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-762122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MASSNKNWPS MFRSKPCGDH HHHHDRQVHH HDEIHTPSFT HYSACPSSPA FTTAPDRVPH  60
PKPRWNPKPE QIQILESIFN SGMINPPRDE IKKIRIRLQE YGQVGDANVF YWFQNRKSRT  120
KHKLRLLQQN LRSPGSDHSI SNNNISPALT SGSDGANPSG GPVHQKYGLF PGQDNDFLVT  180
EPAGFHLPVH DGPSATQVGF GYSDHQPSDV VVPAVTEPEI PFSGEYSADT VPSIMNQIQD  240
KNMFGQCGDL AAKSMVFIND MPFEVASGQQ FNVREAFGND AVLINSSGHP ILTDQWGRTL  300
HPLQDGAVYY LI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518783.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518783.10.0PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ6X7J51e-105WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLA0A178UI571e-103A0A178UI57_ARATH; WOX9B
TrEMBLA0A398AG271e-103A0A398AG27_BRACM; Uncharacterized protein
STRINGXP_010518783.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-102WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]