PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010518926.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

BBR-BPC

Protein Properties

Length: 194aa MW: 21307.7 Da PI: 11.2245

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010518926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	177.8	1.5e-54	111	194	218	301
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++r+CYkWG GGWqS+CCt+ iSvyPLP+s++r+ +R+agrKmS+ga+ klL +La+eG+dls pvDLk+hWA+HGtnkfvti+ XP_010518926.1 111 IPRVCYKWGLGGWQSSCCTIGISVYPLPMSSTRPRSRLAGRKMSNGAYVKLLLRLAGEGHDLSRPVDLKNHWARHGTNKFVTIK 194 689********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.3E-42	1	194	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.7E-48	112	194	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSSYPHQNRL GPEAHTREGA GMAGSDIPIP RTVGIDLSQL THVNTAAESF VVSPPVRDTR 60 NDTKHAKPVK EKSATQKSPS KALKPKTPRK NPSAMPKKPK KTSSVPEVKR IPRVCYKWGL 120 GGWQSSCCTI GISVYPLPMS STRPRSRLAG RKMSNGAYVK LLLRLAGEGH DLSRPVDLKN 180 HWARHGTNKF VTIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010518926.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056261.1	1e-141	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
Swissprot	O82286	8e-69	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A7UN68	1e-69	A7UN68_ARAAE; GAGA-binding transcriptional activator (Fragment)
STRING	XP_010518926.1	1e-141	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	4e-71	basic pentacysteine 7