PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010518982.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 151aa MW: 16642.1 Da PI: 8.1405

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010518982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.6	1.2e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++ l+++la XP_010518982.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPIDKRGDAVSSMVYEANARVRDPVYGCVGAISSLQHQIDVLQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010518982.1 109 QAQAE 113 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.313	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-45	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MKEGGNRKQG TASPCAACKL LRRRCAQDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ 60 ELPIDKRGDA VSSMVYEANA RVRDPVYGCV GAISSLQHQI DVLQTQLAQA QAEVVHLKVR 120 HSAAPQANNK PMFDHMDMVD QVSLGESMWS C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-48	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-48	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010518982.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518982.1	1e-111	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-78	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0B0NU77	8e-84	A0A0B0NU77_GOSAR; LOB domain-containing 4-like protein
TrEMBL	A0A2P5XK95	8e-84	A0A2P5XK95_GOSBA; Uncharacterized protein
STRING	XP_010518982.1	1e-110	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-81	LOB domain-containing protein 4