PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519038.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 468aa MW: 50575.9 Da PI: 5.416

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.7e-31	246	304	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_010519038.1 246 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-31	239	306	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	240	306	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	243	306	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	245	305	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	247	304	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MCSVFEFLDM DSFQGDLTDI VRGTGGGGGG HVSPSPIPPG INSPPQSDLH VDFPSAGFGD 60 PFVNMTDPLL QELNIVASSG YFPGGAIAED NIDSAAAATI SCSNSNSNNN DFKGRKVFDE 120 DDHIQNRCSV FPRIRISHSN IFHEASPCNS PVVSAAAAGG ASPPPGVIRR SPVVGNDMIN 180 VINDATNSPR NCLIDNNNNN SSSSQVQISS PRNLGLKRRK SQAKKVVCIP APAAANSRSS 240 GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE 300 HNHPWPMQRN ALAGSTRSSS HSSKSSSANA NAASTSSSRA SHETKLETHL PNANAAVKEE 360 VRDERQDKMD LDNKNNGNGN GNEDDQSYRP EIHHSSEDFF ADLDEIDGDD PLSLLLARGF 420 GDQTNKTTSS ESFGDFFFDW SVNHNNDHND DNTTSFEDRD DSSNSKSM

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MCSVFEFLDM DSFQGDLTDI VRGTGGGGGG HVSPSPIPPG INSPPQSDLH VDFPSAGFGD  60
PFVNMTDPLL QELNIVASSG YFPGGAIAED NIDSAAAATI SCSNSNSNNN DFKGRKVFDE  120
DDHIQNRCSV FPRIRISHSN IFHEASPCNS PVVSAAAAGG ASPPPGVIRR SPVVGNDMIN  180
VINDATNSPR NCLIDNNNNN SSSSQVQISS PRNLGLKRRK SQAKKVVCIP APAAANSRSS  240
GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPMQRN ALAGSTRSSS HSSKSSSANA NAASTSSSRA SHETKLETHL PNANAAVKEE  360
VRDERQDKMD LDNKNNGNGN GNEDDQSYRP EIHHSSEDFF ADLDEIDGDD PLSLLLARGF  420
GDQTNKTTSS ESFGDFFFDW SVNHNNDHND DNTTSFEDRD DSSNSKSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	220	306	2	79	Disease resistance protein RRS1
5w3x_D	4e-25	220	306	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519038.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593147	9e-69	KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519038.1	0.0	PREDICTED: probable WRKY transcription factor 14
Swissprot	Q9SA80	1e-142	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	D7KFM6	1e-143	D7KFM6_ARALL; WRKY DNA-binding protein 14
STRING	XP_010519038.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-125	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]