PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519069.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 198aa    MW: 21730.4 Da    PI: 9.1101
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.81.4e-3196152158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rakl +++k+ +k +kpylheSRh hAlrRpRg+gGrF
  XP_010519069.1  96 EEPVFVNAKQYHGILRRRQSRAKLVSQNKM-IKPQKPYLHESRHLHALRRPRGCGGRF 152
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-3594155IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.74595155IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-2697152IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-2398120IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-23129152IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKGHEKQEQP LIPPGGSSSQ SSETIPVHSE PLPHLGSSHA IAMAPGAYPY PDPYCRSIFA  60
PNCDTQAYPP QPYPGFHLQL MGIQQHVMPL PSHTVEEPVF VNAKQYHGIL RRRQSRAKLV  120
SQNKMIKPQK PYLHESRHLH ALRRPRGCGG RFLNSKKNDD NEQKEVPSNE NTPEGNANGS  180
ISSDSPATAA PPPPNGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2095159165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519069.11e-144PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ8VY641e-64NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLR0I8988e-69R0I898_9BRAS; Uncharacterized protein
STRINGXP_010519069.11e-144(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-66nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]