PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519114.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 524aa    MW: 58057.4 Da    PI: 6.8926
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-15241299255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010519114.1 241 IFRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 299
                     69******************666664478446*************************98 PP
2AP249.78.8e-16342393155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010519114.1 342 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 393
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-17240309IPR016177DNA-binding domain
CDDcd000183.70E-22240309No hitNo description
Gene3DG3DSA:3.30.730.106.4E-16241308IPR001471AP2/ERF domain
PfamPF008471.6E-11241299IPR001471AP2/ERF domain
PROSITE profilePS5103219.019241307IPR001471AP2/ERF domain
SMARTSM003807.9E-29241313IPR001471AP2/ERF domain
PRINTSPR003677.5E-6242253IPR001471AP2/ERF domain
PfamPF008474.6E-10342393IPR001471AP2/ERF domain
CDDcd000182.00E-11342403No hitNo description
SuperFamilySSF541717.85E-18342403IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-18343402IPR001471AP2/ERF domain
PROSITE profilePS5103219.151343401IPR001471AP2/ERF domain
SMARTSM003807.7E-32343407IPR001471AP2/ERF domain
PRINTSPR003677.5E-6383403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAPTTNWLKF SLSPMEMLRS SDQSQFVSYD ASSAASPHYL IDNFYGWTNQ KPRELFKEEE  60
QITASMADST ILTTFADPQT HAHNPIPKLE DFLGDSSSIV RYSSDCQTET QDSSLTQIYD  120
THRHPAAAGF FSDHRAIAGF QTAFSANSGS EVDDSTSIGR THLGAGEFIG HVVDSSGQEL  180
GFHGGGAFSR EANNKARADP YSGGNDINGK TVAVNEKAVV AVETPDCSKK IADTFGQRTS  240
IFRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQVYLGGY DKEEKAARAY DLAALKYWGP  300
TATTNFPISN YTKEMEEMKP LTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI  360
GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGVNAVTNF EMSRYDVEAI MKSSLPIGGV  420
AKRLKLSLES SEPKPTMGHH HHLQQQQFEP SPDHINFALA TNSPIQTQIP CGIPFEAAAL  480
YHYHNPSLFQ HLPISDSSGS NSTVQAPPMA PNPAEFFLWP NQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519106.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
RefseqXP_010519114.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010519106.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]