PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519124.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 497aa    MW: 55185.4 Da    PI: 7.3521
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78.2e-15214272255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010519124.1 214 IFRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 272
                     69******************666664478446*************************98 PP
2AP249.88.2e-16315366155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010519124.1 315 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 366
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.53E-22213282No hitNo description
SuperFamilySSF541712.03E-17213282IPR016177DNA-binding domain
PfamPF008471.5E-11214272IPR001471AP2/ERF domain
SMARTSM003807.9E-29214286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16214281IPR001471AP2/ERF domain
PROSITE profilePS5103219.019214280IPR001471AP2/ERF domain
PRINTSPR003676.9E-6215226IPR001471AP2/ERF domain
PfamPF008474.3E-10315366IPR001471AP2/ERF domain
CDDcd000182.49E-11315376No hitNo description
SuperFamilySSF541717.19E-18315376IPR016177DNA-binding domain
SMARTSM003807.7E-32316380IPR001471AP2/ERF domain
PROSITE profilePS5103219.151316374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18316375IPR001471AP2/ERF domain
PRINTSPR003676.9E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MKIFLVERKY DSCCANPFRW TNQKPRELFK EEEQITASMA DSTILTTFAD PQTHAHNPIP  60
KLEDFLGDSS SIVRYSSDCQ TETQDSSLTQ IYDTHRHPAA AGFFSDHRAI AGFQTAFSAN  120
SGSEVDDSTS IGRTHLGAGE FIGHVVDSSG QELGFHGGGA FSREANNKAR ADPYSGGNDI  180
NGKTVAVNEK AVVAVETPDC SKKIADTFGQ RTSIFRGVTR HRWTGRYEAH LWDNSCRREG  240
QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTATTNFP ISNYTKEMEE MKPLTKQEFI  300
ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA  360
AIKFRGVNAV TNFEMSRYDV EAIMKSSLPI GGVAKRLKLS LESSEPKPTM GHHHHLQQQQ  420
FEPSPDHINF ALATNSPIQT QIPCGIPFEA AALYHYHNPS LFQHLPISDS SGSNSTVQAP  480
PMAPNPAEFF LWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519124.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010519106.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.10.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]