PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519303.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Protein Properties

Length: 260aa MW: 29956.3 Da PI: 10.2625

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	3e-16	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h ++++ ++tl de+g+++ k+ +k++ l++GW++F +gL +gD ++F+l+ ++f +v XP_010519303.1 129 FVKPMLQSHVTGGFWLGLPLRFCKAHL--PKCDEMVTLVDEEGEEFPTKYLAEKNG----LSGGWRGFSINHGLVDGDALLFQLVAPTKF--KVY 215 89**********************6..34888************666666....*********************9987777..777 PP EE- CS B3 96 vfr 98 ++r XP_010519303.1 216 IIR 218 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-19	121	218	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-24	122	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.19E-28	127	218	No hit	No description
PROSITE profile	PS50863	11.66	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-21	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.0E-15	129	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEESELNYEQ LRLKRLEENK KRMEELNLNK LAQALRGSSS LKPSPMKRGK PRALRQPVDS 60 SAVRRSSRMA LKPAPNYTEL GLELLHRPRR TYRRRDLLNR KYASDEERAY AIDRVKKLQS 120 NLEPEFPSFV KPMLQSHVTG GFWLGLPLRF CKAHLPKCDE MVTLVDEEGE EFPTKYLAEK 180 NGLSGGWRGF SINHGLVDGD ALLFQLVAPT KFKVYIIRVY NDDDFCANGG DKENESENGT 240 ETKELKGTAK RKRRGRGRRM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519303.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519303.1	0.0	PREDICTED: B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	1e-100	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A061E0U4	1e-111	A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	XP_010519302.1	1e-165	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-94	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]